RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
PCDH1-201ENST00000287008 BAZ1AQ9NRL2 1556 aaPredicted RBP24.95■■□□□ 1.58
PCDH1-201ENST00000287008 RGL3Q3MIN7 710 aa24.94■■□□□ 1.58
PCDH1-201ENST00000287008 CEP162Q5TB80 1403 aa24.92■■□□□ 1.58
PCDH1-201ENST00000287008 EIF4G2P78344 907 aaKnown RBP eCLIP24.92■■□□□ 1.58
PCDH1-201ENST00000287008 MRS2Q9HD23 443 aa24.88■■□□□ 1.57
PCDH1-201ENST00000287008 A0A0G2JS52 829 aa24.87■■□□□ 1.57
PCDH1-201ENST00000287008 NPM2Q86SE8 214 aaKnown RBP24.87■■□□□ 1.57
PCDH1-201ENST00000287008 CEP164Q9UPV0 1460 aa24.85■■□□□ 1.57
PCDH1-201ENST00000287008 PLEKHG5O94827 1062 aa24.85■■□□□ 1.57
PCDH1-201ENST00000287008 ANP32AP39687 249 aaKnown RBP24.84■■□□□ 1.57
PCDH1-201ENST00000287008 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.83■■□□□ 1.57
PCDH1-201ENST00000287008 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
PCDH1-201ENST00000287008 ZBTB7CA1YPR0 619 aa24.81■■□□□ 1.56
PCDH1-201ENST00000287008 TNIKQ9UKE5 1360 aa24.8■■□□□ 1.56
PCDH1-201ENST00000287008 HIRIP3Q9BW71 556 aaPredicted RBP24.79■■□□□ 1.56
PCDH1-201ENST00000287008 FKBP8Q14318 412 aa24.77■■□□□ 1.56
PCDH1-201ENST00000287008 UPF2Q9HAU5 1272 aaKnown RBP24.76■■□□□ 1.55
PCDH1-201ENST00000287008 TRHP20396 242 aaPredicted RBP24.76■■□□□ 1.55
PCDH1-201ENST00000287008 HAP1P54257 671 aaPredicted RBP24.74■■□□□ 1.55
PCDH1-201ENST00000287008 HSP90AA1P07900 732 aaKnown RBP24.74■■□□□ 1.55
PCDH1-201ENST00000287008 CDCA8Q53HL2 280 aa24.74■■□□□ 1.55
PCDH1-201ENST00000287008 CARMIL1Q5VZK9 1371 aa24.74■■□□□ 1.55
PCDH1-201ENST00000287008 CUX2O14529 1486 aa24.71■■□□□ 1.55
PCDH1-201ENST00000287008 CCNB3Q8WWL7 1395 aa24.68■■□□□ 1.54
PCDH1-201ENST00000287008 FHAD1B1AJZ9 1412 aa24.65■■□□□ 1.54
PCDH1-201ENST00000287008 CCDC136Q96JN2 1154 aa24.65■■□□□ 1.54
PCDH1-201ENST00000287008 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
PCDH1-201ENST00000287008 CFAP53Q96M91 514 aa24.64■■□□□ 1.54
PCDH1-201ENST00000287008 CARD11Q9BXL7 1154 aa24.63■■□□□ 1.53
PCDH1-201ENST00000287008 POGKQ9P215 609 aa24.62■■□□□ 1.53
PCDH1-201ENST00000287008 KNSTRNQ9Y448 316 aa24.61■■□□□ 1.53
PCDH1-201ENST00000287008 MYH16Q9H6N6 1097 aa24.58■■□□□ 1.53
PCDH1-201ENST00000287008 EIF4G1Q04637 1599 aaKnown RBP24.57■■□□□ 1.52
PCDH1-201ENST00000287008 PPM1GO15355 546 aaPredicted RBP24.57■■□□□ 1.52
PCDH1-201ENST00000287008 LMOD2Q6P5Q4 547 aa24.56■■□□□ 1.52
PCDH1-201ENST00000287008 MLECQ14165 292 aa24.55■■□□□ 1.52
PCDH1-201ENST00000287008 CARMIL2Q6F5E8 1435 aa24.5■■□□□ 1.51
PCDH1-201ENST00000287008 HDGFP51858 240 aaKnown RBP24.5■■□□□ 1.51
PCDH1-201ENST00000287008 KANK1Q14678 1352 aa24.5■■□□□ 1.51
PCDH1-201ENST00000287008 TDRD9Q8NDG6 1382 aaKnown RBP24.48■■□□□ 1.51
PCDH1-201ENST00000287008 SMARCA2P51531 1590 aa24.48■■□□□ 1.51
PCDH1-201ENST00000287008 SOGA1O94964 1423 aa24.46■■□□□ 1.51
PCDH1-201ENST00000287008 MIER1Q8N108 512 aa24.46■■□□□ 1.51
PCDH1-201ENST00000287008 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.51
PCDH1-201ENST00000287008 GGT6Q6P531 493 aa24.43■■□□□ 1.5
PCDH1-201ENST00000287008 NUDCQ9Y266 331 aa24.43■■□□□ 1.5
PCDH1-201ENST00000287008 ANP32BQ92688 251 aaKnown RBP24.43■■□□□ 1.5
PCDH1-201ENST00000287008 SIN3AQ96ST3 1273 aa24.42■■□□□ 1.5
PCDH1-201ENST00000287008 ARXQ96QS3 562 aa24.41■■□□□ 1.5
PCDH1-201ENST00000287008 MROH2BQ7Z745 1585 aa24.41■■□□□ 1.5
PCDH1-201ENST00000287008 CCDC88BA6NC98 1476 aa24.4■■□□□ 1.5
PCDH1-201ENST00000287008 MAPK8IP3Q9UPT6 1336 aa24.38■■□□□ 1.49
PCDH1-201ENST00000287008 EFCAB2Q5VUJ9 269 aa24.38■■□□□ 1.49
PCDH1-201ENST00000287008 DCAF11Q8TEB1 546 aa24.37■■□□□ 1.49
PCDH1-201ENST00000287008 NEUROD2Q15784 382 aa24.33■■□□□ 1.49
PCDH1-201ENST00000287008 CADPSQ9ULU8 1353 aa24.32■■□□□ 1.48
PCDH1-201ENST00000287008 IRX6P78412 446 aaPredicted RBP24.31■■□□□ 1.48
PCDH1-201ENST00000287008 TNNT2P45379 298 aaPredicted RBP24.3■■□□□ 1.48
PCDH1-201ENST00000287008 TMF1P82094 1093 aa24.29■■□□□ 1.48
PCDH1-201ENST00000287008 SRPK2P78362 688 aaKnown RBP24.26■■□□□ 1.47
PCDH1-201ENST00000287008 SENP3-EIF4A1A0A087X0R7 540 aa24.25■■□□□ 1.47
PCDH1-201ENST00000287008 LAS1LQ9Y4W2 734 aaKnown RBP24.25■■□□□ 1.47
PCDH1-201ENST00000287008 U2SURPO15042 1029 aaKnown RBP24.24■■□□□ 1.47
PCDH1-201ENST00000287008 FMN1Q68DA7 1419 aa24.23■■□□□ 1.47
PCDH1-201ENST00000287008 PKD2Q13563 968 aa24.23■■□□□ 1.47
PCDH1-201ENST00000287008 FTSJ3Q8IY81 847 aaKnown RBP24.22■■□□□ 1.47
PCDH1-201ENST00000287008 VPS8Q8N3P4 1428 aa24.21■■□□□ 1.47
PCDH1-201ENST00000287008 TIMELESSQ9UNS1 1208 aa24.21■■□□□ 1.47
PCDH1-201ENST00000287008 SAFB2Q14151 953 aaKnown RBP eCLIP24.21■■□□□ 1.47
PCDH1-201ENST00000287008 ARHGAP35Q9NRY4 1499 aa24.2■■□□□ 1.46
PCDH1-201ENST00000287008 CC2D1BQ5T0F9 858 aaKnown RBP24.19■■□□□ 1.46
PCDH1-201ENST00000287008 JPH4Q96JJ6 628 aa24.17■■□□□ 1.46
PCDH1-201ENST00000287008 PNNQ9H307 717 aaKnown RBP24.17■■□□□ 1.46
PCDH1-201ENST00000287008 SOX12O15370 315 aa24.16■■□□□ 1.46
PCDH1-201ENST00000287008 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
PCDH1-201ENST00000287008 NPHP1O15259 732 aa24.15■■□□□ 1.46
PCDH1-201ENST00000287008 STK26Q9P289 416 aa24.15■■□□□ 1.46
PCDH1-201ENST00000287008 KANK4Q5T7N3 995 aaPredicted RBP24.14■■□□□ 1.45
PCDH1-201ENST00000287008 KIF3BO15066 747 aa24.13■■□□□ 1.45
PCDH1-201ENST00000287008 SETD5Q9C0A6 1442 aa24.11■■□□□ 1.45
PCDH1-201ENST00000287008 NUP155O75694 1391 aa24.1■■□□□ 1.45
PCDH1-201ENST00000287008 ANKRD30AQ9BXX3 1397 aa24.1■■□□□ 1.45
PCDH1-201ENST00000287008 MORC1Q86VD1 984 aa24.08■■□□□ 1.45
PCDH1-201ENST00000287008 RSPH4AQ5TD94 716 aa24.07■■□□□ 1.44
PCDH1-201ENST00000287008 CHMP4BQ9H444 224 aaKnown RBP24.06■■□□□ 1.44
PCDH1-201ENST00000287008 ATAD2BQ9ULI0 1458 aa24.06■■□□□ 1.44
PCDH1-201ENST00000287008 FRAT1Q92837 279 aaPredicted RBP24.06■■□□□ 1.44
PCDH1-201ENST00000287008 HDGFL2Q7Z4V5 671 aaPredicted RBP24.05■■□□□ 1.44
PCDH1-201ENST00000287008 SPAG9O60271 1321 aaKnown RBP24.05■■□□□ 1.44
PCDH1-201ENST00000287008 TOP2AP11388 1531 aaKnown RBP24.04■■□□□ 1.44
PCDH1-201ENST00000287008 FOXD1Q16676 465 aa24.04■■□□□ 1.44
PCDH1-201ENST00000287008 MS4A1P11836 297 aa24.03■■□□□ 1.44
PCDH1-201ENST00000287008 BECN1Q14457 450 aa24.03■■□□□ 1.44
PCDH1-201ENST00000287008 RAPGEF2Q9Y4G8 1499 aa24.02■■□□□ 1.44
PCDH1-201ENST00000287008 HNRNPMP52272 730 aaKnown RBP eCLIP24.01■■□□□ 1.43
PCDH1-201ENST00000287008 MPHOSPH9Q99550 1183 aa24.01■■□□□ 1.43
PCDH1-201ENST00000287008 CASC1Q6TDU7 716 aa24.01■■□□□ 1.43
PCDH1-201ENST00000287008 SUPT16HQ9Y5B9 1047 aaKnown RBP24■■□□□ 1.43
PCDH1-201ENST00000287008 EIF5BO60841 1220 aaKnown RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms