RNA–Protein interactions for RNA: ENST00000284049.7

CHD1-201, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1, Length 6,457 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-201ENST00000284049 ATF5Q9Y2D1 282 aaPredicted RBP4.49□□□□□ -1.69
CHD1-201ENST00000284049 STK25O00506 426 aa4.49□□□□□ -1.69
CHD1-201ENST00000284049 STAG3Q9UJ98 1225 aa4.49□□□□□ -1.69
CHD1-201ENST00000284049 CCDC9Q9Y3X0 531 aaKnown RBP4.49□□□□□ -1.69
CHD1-201ENST00000284049 MYT1Q01538 1121 aa4.48□□□□□ -1.69
CHD1-201ENST00000284049 LMOD2Q6P5Q4 547 aa4.48□□□□□ -1.69
CHD1-201ENST00000284049 RSPH6AQ9H0K4 717 aa4.47□□□□□ -1.69
CHD1-201ENST00000284049 PELP1Q8IZL8 1130 aaKnown RBP4.47□□□□□ -1.69
CHD1-201ENST00000284049 ATP1B4Q9UN42 357 aaPredicted RBP4.46□□□□□ -1.7
CHD1-201ENST00000284049 PDIA4P13667 645 aaKnown RBP4.45□□□□□ -1.7
CHD1-201ENST00000284049 ZBTB12Q9Y330 459 aaPredicted RBP4.44□□□□□ -1.7
CHD1-201ENST00000284049 ZNF692Q9BU19 519 aaPredicted RBP4.43□□□□□ -1.7
CHD1-201ENST00000284049 DCAF8Q5TAQ9 597 aa4.42□□□□□ -1.7
CHD1-201ENST00000284049 POLA2Q14181 598 aa4.42□□□□□ -1.7
CHD1-201ENST00000284049 UBTFP17480 764 aaKnown RBP4.41□□□□□ -1.7
CHD1-201ENST00000284049 CAPN15O75808 1086 aa4.41□□□□□ -1.7
CHD1-201ENST00000284049 KRI1Q8N9T8 703 aaKnown RBP4.41□□□□□ -1.7
CHD1-201ENST00000284049 U3KPZ7 1027 aaPredicted RBP4.41□□□□□ -1.7
CHD1-201ENST00000284049 HS6ST3Q8IZP7 471 aa4.4□□□□□ -1.7
CHD1-201ENST00000284049 STK24Q9Y6E0 443 aa4.4□□□□□ -1.71
CHD1-201ENST00000284049 TRIM26Q12899 539 aaPredicted RBP4.4□□□□□ -1.71
CHD1-201ENST00000284049 GSE1Q14687 1217 aa4.39□□□□□ -1.71
CHD1-201ENST00000284049 HMGB1P09429 215 aaKnown RBP4.38□□□□□ -1.71
CHD1-201ENST00000284049 SMYD5Q6GMV2 418 aa4.37□□□□□ -1.71
CHD1-201ENST00000284049 ZMYND15Q9H091 742 aa4.37□□□□□ -1.71
CHD1-201ENST00000284049 SHROOM4Q9ULL8 1493 aa4.37□□□□□ -1.71
CHD1-201ENST00000284049 APBB1O00213 710 aa4.37□□□□□ -1.71
CHD1-201ENST00000284049 BRPF1P55201 1214 aaPredicted RBP4.36□□□□□ -1.71
CHD1-201ENST00000284049 MKRN4PQ13434 485 aaPredicted RBP4.36□□□□□ -1.71
CHD1-201ENST00000284049 PROM2Q8N271 834 aa4.36□□□□□ -1.71
CHD1-201ENST00000284049 PABPN1Q86U42 306 aaKnown RBP eCLIP4.35□□□□□ -1.71
CHD1-201ENST00000284049 BCL11BQ9C0K0 894 aaPredicted RBP4.35□□□□□ -1.71
CHD1-201ENST00000284049 VGFO15240 615 aaPredicted RBP4.34□□□□□ -1.71
CHD1-201ENST00000284049 FAM212AQ96EL1 285 aa4.34□□□□□ -1.71
CHD1-201ENST00000284049 AEBP1Q8IUX7 1158 aa4.34□□□□□ -1.72
CHD1-201ENST00000284049 KCTD17Q8N5Z5 321 aa4.33□□□□□ -1.72
CHD1-201ENST00000284049 RAD21O60216 631 aa4.33□□□□□ -1.72
CHD1-201ENST00000284049 IL27Q8NEV9 243 aa4.33□□□□□ -1.72
CHD1-201ENST00000284049 CCDC97Q96F63 343 aaPredicted RBP4.33□□□□□ -1.72
CHD1-201ENST00000284049 RIOK3O14730 519 aaKnown RBP4.33□□□□□ -1.72
CHD1-201ENST00000284049 SPDYE2BA6NHP3 402 aa4.32□□□□□ -1.72
CHD1-201ENST00000284049 SPDYE6P0CI01 402 aa4.32□□□□□ -1.72
CHD1-201ENST00000284049 SPDYE2Q495Y8 402 aa4.32□□□□□ -1.72
CHD1-201ENST00000284049 SLC24A3Q9HC58 644 aa4.32□□□□□ -1.72
CHD1-201ENST00000284049 DNAJC5Q9H3Z4 198 aa4.31□□□□□ -1.72
CHD1-201ENST00000284049 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.31□□□□□ -1.72
CHD1-201ENST00000284049 GTPBP6O43824 516 aaPredicted RBP4.31□□□□□ -1.72
CHD1-201ENST00000284049 ABCB7O75027 752 aa4.31□□□□□ -1.72
CHD1-201ENST00000284049 TMCO4Q5TGY1 634 aa4.3□□□□□ -1.72
CHD1-201ENST00000284049 KCNV2Q8TDN2 545 aa4.3□□□□□ -1.72
CHD1-201ENST00000284049 ZCCHC6Q5VYS8 1495 aaKnown RBP4.29□□□□□ -1.72
CHD1-201ENST00000284049 E2F4Q16254 413 aa4.28□□□□□ -1.72
CHD1-201ENST00000284049 ARID3CA6NKF2 412 aa4.28□□□□□ -1.72
CHD1-201ENST00000284049 ZC3H15Q8WU90 426 aaKnown RBP4.27□□□□□ -1.73
CHD1-201ENST00000284049 FBXW7Q969H0 707 aa4.27□□□□□ -1.73
CHD1-201ENST00000284049 CDK11BP21127 795 aaKnown RBP4.27□□□□□ -1.73
CHD1-201ENST00000284049 CDK11AQ9UQ88 783 aaPredicted RBP4.27□□□□□ -1.73
CHD1-201ENST00000284049 NACADO15069 1562 aa4.26□□□□□ -1.73
CHD1-201ENST00000284049 FLIIQ13045 1269 aa4.26□□□□□ -1.73
CHD1-201ENST00000284049 NKX1-1Q15270 411 aaPredicted RBP4.26□□□□□ -1.73
CHD1-201ENST00000284049 AK7Q96M32 723 aa4.25□□□□□ -1.73
CHD1-201ENST00000284049 ARHGEF1Q92888 912 aaKnown RBP4.25□□□□□ -1.73
CHD1-201ENST00000284049 GPBP1L1Q9HC44 474 aaPredicted RBP4.25□□□□□ -1.73
CHD1-201ENST00000284049 SEMA3EO15041 775 aa4.24□□□□□ -1.73
CHD1-201ENST00000284049 SPINK5Q9NQ38 1064 aaPredicted RBP4.24□□□□□ -1.73
CHD1-201ENST00000284049 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.23□□□□□ -1.73
CHD1-201ENST00000284049 ZFP91Q96JP5 570 aaPredicted RBP4.23□□□□□ -1.73
CHD1-201ENST00000284049 USP35Q9P2H5 1018 aa4.23□□□□□ -1.73
CHD1-201ENST00000284049 RBM25P49756 843 aaKnown RBP4.23□□□□□ -1.73
CHD1-201ENST00000284049 E9PSI1 815 aa4.23□□□□□ -1.73
CHD1-201ENST00000284049 RNF25Q96BH1 459 aaPredicted RBP4.22□□□□□ -1.73
CHD1-201ENST00000284049 TTLL12Q14166 644 aaPredicted RBP4.22□□□□□ -1.73
CHD1-201ENST00000284049 OSCARQ8IYS5 282 aa4.22□□□□□ -1.73
CHD1-201ENST00000284049 POLR3GLQ9BT43 218 aa4.21□□□□□ -1.73
CHD1-201ENST00000284049 CLEC11AQ9Y240 323 aa4.21□□□□□ -1.74
CHD1-201ENST00000284049 DDRGK1Q96HY6 314 aa4.21□□□□□ -1.74
CHD1-201ENST00000284049 ZNF316A6NFI3 1004 aaPredicted RBP4.2□□□□□ -1.74
CHD1-201ENST00000284049 MKRN3Q13064 507 aaKnown RBP4.2□□□□□ -1.74
CHD1-201ENST00000284049 GPIHBP1Q8IV16 184 aa4.2□□□□□ -1.74
CHD1-201ENST00000284049 HSP90B1P14625 803 aaKnown RBP4.2□□□□□ -1.74
CHD1-201ENST00000284049 HRCP23327 699 aa4.2□□□□□ -1.74
CHD1-201ENST00000284049 ZNF467Q7Z7K2 595 aaPredicted RBP4.2□□□□□ -1.74
CHD1-201ENST00000284049 PYGBP11216 843 aa4.19□□□□□ -1.74
CHD1-201ENST00000284049 ACIN1Q9UKV3 1341 aaKnown RBP4.19□□□□□ -1.74
CHD1-201ENST00000284049 WWC1Q8IX03 1113 aa4.19□□□□□ -1.74
CHD1-201ENST00000284049 CCDC82Q8N4S0 544 aa4.19□□□□□ -1.74
CHD1-201ENST00000284049 MFAP1P55081 439 aaKnown RBP4.18□□□□□ -1.74
CHD1-201ENST00000284049 KDM4CQ9H3R0 1056 aa4.18□□□□□ -1.74
CHD1-201ENST00000284049 EIF5BO60841 1220 aaKnown RBP4.18□□□□□ -1.74
CHD1-201ENST00000284049 BARGINQ6ZT62 677 aa4.18□□□□□ -1.74
CHD1-201ENST00000284049 GZF1Q9H116 711 aaPredicted RBP4.18□□□□□ -1.74
CHD1-201ENST00000284049 LARP6Q9BRS8 491 aaKnown RBP4.18□□□□□ -1.74
CHD1-201ENST00000284049 PCMTD1Q96MG8 357 aaPredicted RBP4.17□□□□□ -1.74
CHD1-201ENST00000284049 ZNF777Q9ULD5 760 aaPredicted RBP4.17□□□□□ -1.74
CHD1-201ENST00000284049 NUTM2FA1L443 756 aa4.16□□□□□ -1.74
CHD1-201ENST00000284049 PDE4AP27815 886 aa4.16□□□□□ -1.74
CHD1-201ENST00000284049 GOLGA2Q08379 1002 aa4.16□□□□□ -1.74
CHD1-201ENST00000284049 PDE4DQ08499 809 aa4.16□□□□□ -1.74
CHD1-201ENST00000284049 PDAP1Q13442 181 aaKnown RBP4.15□□□□□ -1.74
CHD1-201ENST00000284049 PDE4CQ08493 712 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms