RNA–Protein interactions for RNA: ENST00000262676.9

TTC39A-202, Transcript of tetratricopeptide repeat domain 39A, humanhuman

TSL 2 BASIC

Gene TTC39A, Length 6,287 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39A-202ENST00000262676 CCDC136Q96JN2 1154 aa17.21■□□□□ 0.34
TTC39A-202ENST00000262676 TRIM44Q96DX7 344 aaPredicted RBP17.19■□□□□ 0.34
TTC39A-202ENST00000262676 LMOD2Q6P5Q4 547 aa17.18■□□□□ 0.34
TTC39A-202ENST00000262676 PLEKHD1A6NEE1 506 aa17.15■□□□□ 0.34
TTC39A-202ENST00000262676 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.13■□□□□ 0.33
TTC39A-202ENST00000262676 IRX6P78412 446 aaPredicted RBP17.12■□□□□ 0.33
TTC39A-202ENST00000262676 TPRNQ4KMQ1 711 aa17.1■□□□□ 0.33
TTC39A-202ENST00000262676 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
TTC39A-202ENST00000262676 RTN4Q9NQC3 1192 aaKnown RBP17.09■□□□□ 0.33
TTC39A-202ENST00000262676 NCLP19338 710 aaKnown RBP17.08■□□□□ 0.33
TTC39A-202ENST00000262676 DNTTIP2Q5QJE6 756 aaKnown RBP17.08■□□□□ 0.33
TTC39A-202ENST00000262676 MTUS2Q5JR59 1369 aa17.08■□□□□ 0.32
TTC39A-202ENST00000262676 PTMAP06454 111 aaKnown RBP17.07■□□□□ 0.32
TTC39A-202ENST00000262676 AEBP2Q6ZN18 517 aaPredicted RBP17.07■□□□□ 0.32
TTC39A-202ENST00000262676 BAZ1BQ9UIG0 1483 aaKnown RBP17.06■□□□□ 0.32
TTC39A-202ENST00000262676 TULP1O00294 542 aaPredicted RBP17.06■□□□□ 0.32
TTC39A-202ENST00000262676 NAP1L5Q96NT1 182 aaPredicted RBP17.06■□□□□ 0.32
TTC39A-202ENST00000262676 RRP7BPQ9NSQ0 103 aa17.05■□□□□ 0.32
TTC39A-202ENST00000262676 DDX10Q13206 875 aaKnown RBP17.05■□□□□ 0.32
TTC39A-202ENST00000262676 RGL3Q3MIN7 710 aa17.04■□□□□ 0.32
TTC39A-202ENST00000262676 ZCCHC6Q5VYS8 1495 aaKnown RBP17■□□□□ 0.31
TTC39A-202ENST00000262676 TMC1Q8TDI8 760 aa16.98■□□□□ 0.31
TTC39A-202ENST00000262676 MYH16Q9H6N6 1097 aa16.98■□□□□ 0.31
TTC39A-202ENST00000262676 BECN1Q14457 450 aa16.98■□□□□ 0.31
TTC39A-202ENST00000262676 DDRGK1Q96HY6 314 aa16.97■□□□□ 0.31
TTC39A-202ENST00000262676 WDR43Q15061 677 aaKnown RBP eCLIP16.97■□□□□ 0.31
TTC39A-202ENST00000262676 GOLGA6L22H0YM25 854 aa16.96■□□□□ 0.3
TTC39A-202ENST00000262676 TONSLQ96HA7 1378 aa16.94■□□□□ 0.3
TTC39A-202ENST00000262676 CCDC180Q9P1Z9 1646 aa16.94■□□□□ 0.3
TTC39A-202ENST00000262676 ZRSR1Q15695 479 aaKnown RBP16.94■□□□□ 0.3
TTC39A-202ENST00000262676 CFDP1Q9UEE9 299 aaPredicted RBP16.92■□□□□ 0.3
TTC39A-202ENST00000262676 PPM1GO15355 546 aaPredicted RBP16.92■□□□□ 0.3
TTC39A-202ENST00000262676 ANP32EQ9BTT0 268 aa16.9■□□□□ 0.3
TTC39A-202ENST00000262676 PLCB2Q00722 1185 aa16.89■□□□□ 0.29
TTC39A-202ENST00000262676 EIF4G1Q04637 1599 aaKnown RBP16.88■□□□□ 0.29
TTC39A-202ENST00000262676 NPHP1O15259 732 aa16.87■□□□□ 0.29
TTC39A-202ENST00000262676 MRS2Q9HD23 443 aa16.87■□□□□ 0.29
TTC39A-202ENST00000262676 TAOK2Q9UL54 1235 aa16.86■□□□□ 0.29
TTC39A-202ENST00000262676 ERICH6BQ5W0A0 696 aa16.86■□□□□ 0.29
TTC39A-202ENST00000262676 CYB5RLQ6IPT4 315 aa16.86■□□□□ 0.29
TTC39A-202ENST00000262676 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
TTC39A-202ENST00000262676 NACADO15069 1562 aa16.85■□□□□ 0.29
TTC39A-202ENST00000262676 LAS1LQ9Y4W2 734 aaKnown RBP16.84■□□□□ 0.29
TTC39A-202ENST00000262676 SOX12O15370 315 aa16.84■□□□□ 0.29
TTC39A-202ENST00000262676 GGT6Q6P531 493 aa16.83■□□□□ 0.29
TTC39A-202ENST00000262676 HIRIP3Q9BW71 556 aaPredicted RBP16.82■□□□□ 0.28
TTC39A-202ENST00000262676 POGKQ9P215 609 aa16.81■□□□□ 0.28
TTC39A-202ENST00000262676 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
TTC39A-202ENST00000262676 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
TTC39A-202ENST00000262676 SAFB2Q14151 953 aaKnown RBP eCLIP16.76■□□□□ 0.27
TTC39A-202ENST00000262676 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
TTC39A-202ENST00000262676 CASC1Q6TDU7 716 aa16.73■□□□□ 0.27
TTC39A-202ENST00000262676 MIER1Q8N108 512 aa16.72■□□□□ 0.27
TTC39A-202ENST00000262676 GOLGA6L6A8MZA4 724 aa16.72■□□□□ 0.27
TTC39A-202ENST00000262676 WRNQ14191 1432 aaPredicted RBP eCLIP16.7■□□□□ 0.26
TTC39A-202ENST00000262676 CLIP1P30622 1438 aa16.69■□□□□ 0.26
TTC39A-202ENST00000262676 KIF27Q86VH2 1401 aa16.68■□□□□ 0.26
TTC39A-202ENST00000262676 ARID3AQ99856 593 aa16.68■□□□□ 0.26
TTC39A-202ENST00000262676 TDRD9Q8NDG6 1382 aaKnown RBP16.67■□□□□ 0.26
TTC39A-202ENST00000262676 STK26Q9P289 416 aa16.66■□□□□ 0.26
TTC39A-202ENST00000262676 RSF1Q96T23 1441 aaPredicted RBP16.66■□□□□ 0.26
TTC39A-202ENST00000262676 PAK3O75914 559 aaPredicted RBP16.65■□□□□ 0.26
TTC39A-202ENST00000262676 CHAF1AQ13111 956 aaPredicted RBP16.65■□□□□ 0.26
TTC39A-202ENST00000262676 HSP90AB1P08238 724 aaKnown RBP16.64■□□□□ 0.25
TTC39A-202ENST00000262676 NOP58Q9Y2X3 529 aaKnown RBP16.63■□□□□ 0.25
TTC39A-202ENST00000262676 PDS5BQ9NTI5 1447 aa16.63■□□□□ 0.25
TTC39A-202ENST00000262676 CUX2O14529 1486 aa16.62■□□□□ 0.25
TTC39A-202ENST00000262676 MSNP26038 577 aaKnown RBP16.62■□□□□ 0.25
TTC39A-202ENST00000262676 NAP1L2Q9ULW6 460 aaPredicted RBP16.62■□□□□ 0.25
TTC39A-202ENST00000262676 FTSJ3Q8IY81 847 aaKnown RBP16.61■□□□□ 0.25
TTC39A-202ENST00000262676 CLSTN1O94985 981 aa16.6■□□□□ 0.25
TTC39A-202ENST00000262676 RGS3P49796 1198 aa16.6■□□□□ 0.25
TTC39A-202ENST00000262676 SUPT16HQ9Y5B9 1047 aaKnown RBP16.59■□□□□ 0.25
TTC39A-202ENST00000262676 DRC7Q8IY82 874 aa16.59■□□□□ 0.25
TTC39A-202ENST00000262676 NRDCO43847 1150 aa16.59■□□□□ 0.25
TTC39A-202ENST00000262676 NUTM2DQ5VT03 806 aaPredicted RBP16.58■□□□□ 0.25
TTC39A-202ENST00000262676 HDGFP51858 240 aaKnown RBP16.58■□□□□ 0.24
TTC39A-202ENST00000262676 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
TTC39A-202ENST00000262676 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
TTC39A-202ENST00000262676 NEUROD2Q15784 382 aa16.56■□□□□ 0.24
TTC39A-202ENST00000262676 SPRYD3Q8NCJ5 442 aa16.56■□□□□ 0.24
TTC39A-202ENST00000262676 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
TTC39A-202ENST00000262676 FGD1P98174 961 aa16.56■□□□□ 0.24
TTC39A-202ENST00000262676 DEKP35659 375 aaKnown RBP16.55■□□□□ 0.24
TTC39A-202ENST00000262676 SRPK2P78362 688 aaKnown RBP16.54■□□□□ 0.24
TTC39A-202ENST00000262676 CSB-PGBD3P0DP91 1061 aa16.54■□□□□ 0.24
TTC39A-202ENST00000262676 KANK1Q14678 1352 aa16.53■□□□□ 0.24
TTC39A-202ENST00000262676 TNNT3P45378 269 aaPredicted RBP16.53■□□□□ 0.24
TTC39A-202ENST00000262676 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
TTC39A-202ENST00000262676 PHF23Q9BUL5 403 aaPredicted RBP16.53■□□□□ 0.24
TTC39A-202ENST00000262676 SOGA1O94964 1423 aa16.52■□□□□ 0.24
TTC39A-202ENST00000262676 GOLGA6L4A6NEF3 574 aa16.52■□□□□ 0.23
TTC39A-202ENST00000262676 NUTM2FA1L443 756 aa16.52■□□□□ 0.23
TTC39A-202ENST00000262676 CARD11Q9BXL7 1154 aa16.51■□□□□ 0.23
TTC39A-202ENST00000262676 ZNF330Q9Y3S2 320 aaPredicted RBP16.5■□□□□ 0.23
TTC39A-202ENST00000262676 KCNJ4P48050 445 aa16.5■□□□□ 0.23
TTC39A-202ENST00000262676 L1TD1Q5T7N2 865 aaKnown RBP16.48■□□□□ 0.23
TTC39A-202ENST00000262676 CARMIL2Q6F5E8 1435 aa16.48■□□□□ 0.23
TTC39A-202ENST00000262676 FRAT1Q92837 279 aaPredicted RBP16.48■□□□□ 0.23
TTC39A-202ENST00000262676 OS9Q13438 667 aaPredicted RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms