RNA–Protein interactions for RNA: ENST00000261799.8

PDGFRB-201, Transcript of platelet derived growth factor receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRB, Length 5,717 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-201ENST00000261799 MLECQ14165 292 aa18.22■□□□□ 0.51
PDGFRB-201ENST00000261799 RRP7BPQ9NSQ0 103 aa18.22■□□□□ 0.51
PDGFRB-201ENST00000261799 CLIP1P30622 1438 aa18.22■□□□□ 0.51
PDGFRB-201ENST00000261799 WRNQ14191 1432 aaPredicted RBP eCLIP18.22■□□□□ 0.51
PDGFRB-201ENST00000261799 KANK1Q14678 1352 aa18.22■□□□□ 0.51
PDGFRB-201ENST00000261799 NPHP1O15259 732 aa18.21■□□□□ 0.51
PDGFRB-201ENST00000261799 ARXQ96QS3 562 aa18.21■□□□□ 0.51
PDGFRB-201ENST00000261799 POGKQ9P215 609 aa18.19■□□□□ 0.5
PDGFRB-201ENST00000261799 EEA1Q15075 1411 aa18.19■□□□□ 0.5
PDGFRB-201ENST00000261799 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.18■□□□□ 0.5
PDGFRB-201ENST00000261799 BAZ1AQ9NRL2 1556 aaPredicted RBP18.17■□□□□ 0.5
PDGFRB-201ENST00000261799 MYH16Q9H6N6 1097 aa18.17■□□□□ 0.5
PDGFRB-201ENST00000261799 GOLGA3Q08378 1498 aa18.17■□□□□ 0.5
PDGFRB-201ENST00000261799 AEBP2Q6ZN18 517 aaPredicted RBP18.15■□□□□ 0.5
PDGFRB-201ENST00000261799 CDCA8Q53HL2 280 aa18.15■□□□□ 0.5
PDGFRB-201ENST00000261799 CFAP53Q96M91 514 aa18.13■□□□□ 0.49
PDGFRB-201ENST00000261799 HSP90AA1P07900 732 aaKnown RBP18.12■□□□□ 0.49
PDGFRB-201ENST00000261799 RGL3Q3MIN7 710 aa18.12■□□□□ 0.49
PDGFRB-201ENST00000261799 CARMIL2Q6F5E8 1435 aa18.12■□□□□ 0.49
PDGFRB-201ENST00000261799 UPF2Q9HAU5 1272 aaKnown RBP18.12■□□□□ 0.49
PDGFRB-201ENST00000261799 CCNB3Q8WWL7 1395 aa18.09■□□□□ 0.49
PDGFRB-201ENST00000261799 FAM9BQ8IZU0 186 aa18.07■□□□□ 0.48
PDGFRB-201ENST00000261799 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
PDGFRB-201ENST00000261799 SALL2Q9Y467 1007 aaPredicted RBP18.06■□□□□ 0.48
PDGFRB-201ENST00000261799 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
PDGFRB-201ENST00000261799 PPM1GO15355 546 aaPredicted RBP18.04■□□□□ 0.48
PDGFRB-201ENST00000261799 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
PDGFRB-201ENST00000261799 CUX2O14529 1486 aa18.01■□□□□ 0.47
PDGFRB-201ENST00000261799 ANP32AP39687 249 aaKnown RBP17.99■□□□□ 0.47
PDGFRB-201ENST00000261799 EIF4G2P78344 907 aaKnown RBP eCLIP17.99■□□□□ 0.47
PDGFRB-201ENST00000261799 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
PDGFRB-201ENST00000261799 CDK11BP21127 795 aaKnown RBP17.98■□□□□ 0.47
PDGFRB-201ENST00000261799 KNSTRNQ9Y448 316 aa17.97■□□□□ 0.47
PDGFRB-201ENST00000261799 HNRNPUQ00839 825 aaKnown RBP eCLIP17.96■□□□□ 0.47
PDGFRB-201ENST00000261799 CARMIL1Q5VZK9 1371 aa17.95■□□□□ 0.46
PDGFRB-201ENST00000261799 DDX10Q13206 875 aaKnown RBP17.95■□□□□ 0.46
PDGFRB-201ENST00000261799 NUDCQ9Y266 331 aa17.95■□□□□ 0.46
PDGFRB-201ENST00000261799 MAPK8IP3Q9UPT6 1336 aa17.94■□□□□ 0.46
PDGFRB-201ENST00000261799 ANP32BQ92688 251 aaKnown RBP17.93■□□□□ 0.46
PDGFRB-201ENST00000261799 FHAD1B1AJZ9 1412 aa17.93■□□□□ 0.46
PDGFRB-201ENST00000261799 GGT6Q6P531 493 aa17.93■□□□□ 0.46
PDGFRB-201ENST00000261799 SOGA1O94964 1423 aa17.91■□□□□ 0.46
PDGFRB-201ENST00000261799 MRS2Q9HD23 443 aa17.91■□□□□ 0.46
PDGFRB-201ENST00000261799 CARD11Q9BXL7 1154 aa17.9■□□□□ 0.46
PDGFRB-201ENST00000261799 CCDC9Q9Y3X0 531 aaKnown RBP17.89■□□□□ 0.45
PDGFRB-201ENST00000261799 PNNQ9H307 717 aaKnown RBP17.88■□□□□ 0.45
PDGFRB-201ENST00000261799 EID1Q9Y6B2 187 aa17.88■□□□□ 0.45
PDGFRB-201ENST00000261799 CEP162Q5TB80 1403 aa17.86■□□□□ 0.45
PDGFRB-201ENST00000261799 EFCAB2Q5VUJ9 269 aa17.85■□□□□ 0.45
PDGFRB-201ENST00000261799 GOLGA2Q08379 1002 aa17.85■□□□□ 0.45
PDGFRB-201ENST00000261799 SRPK2P78362 688 aaKnown RBP17.84■□□□□ 0.45
PDGFRB-201ENST00000261799 LAS1LQ9Y4W2 734 aaKnown RBP17.83■□□□□ 0.45
PDGFRB-201ENST00000261799 CSB-PGBD3P0DP91 1061 aa17.82■□□□□ 0.44
PDGFRB-201ENST00000261799 TMX4Q9H1E5 349 aaPredicted RBP17.82■□□□□ 0.44
PDGFRB-201ENST00000261799 OSCARQ8IYS5 282 aa17.81■□□□□ 0.44
PDGFRB-201ENST00000261799 PAK3O75914 559 aaPredicted RBP17.8■□□□□ 0.44
PDGFRB-201ENST00000261799 CASC1Q6TDU7 716 aa17.77■□□□□ 0.44
PDGFRB-201ENST00000261799 SOX12O15370 315 aa17.77■□□□□ 0.43
PDGFRB-201ENST00000261799 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
PDGFRB-201ENST00000261799 TDRD9Q8NDG6 1382 aaKnown RBP17.76■□□□□ 0.43
PDGFRB-201ENST00000261799 HDGFL2Q7Z4V5 671 aaPredicted RBP17.76■□□□□ 0.43
PDGFRB-201ENST00000261799 STK26Q9P289 416 aa17.74■□□□□ 0.43
PDGFRB-201ENST00000261799 TMF1P82094 1093 aa17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 CYB5RLQ6IPT4 315 aa17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 OS9Q13438 667 aaPredicted RBP17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 FTSJ3Q8IY81 847 aaKnown RBP17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 CCDC136Q96JN2 1154 aa17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 U2SURPO15042 1029 aaKnown RBP17.73■□□□□ 0.43
PDGFRB-201ENST00000261799 EIF5BO60841 1220 aaKnown RBP17.72■□□□□ 0.43
PDGFRB-201ENST00000261799 TNNT2P45379 298 aaPredicted RBP17.72■□□□□ 0.43
PDGFRB-201ENST00000261799 SAFB2Q14151 953 aaKnown RBP eCLIP17.72■□□□□ 0.43
PDGFRB-201ENST00000261799 CADPSQ9ULU8 1353 aa17.71■□□□□ 0.43
PDGFRB-201ENST00000261799 CHMP4BQ9H444 224 aaKnown RBP17.7■□□□□ 0.42
PDGFRB-201ENST00000261799 MEX3CQ5U5Q3 659 aaKnown RBP17.69■□□□□ 0.42
PDGFRB-201ENST00000261799 RTF1Q92541 710 aaKnown RBP17.69■□□□□ 0.42
PDGFRB-201ENST00000261799 GTF3C3Q9Y5Q9 886 aa17.69■□□□□ 0.42
PDGFRB-201ENST00000261799 DCAF11Q8TEB1 546 aa17.69■□□□□ 0.42
PDGFRB-201ENST00000261799 FKBP8Q14318 412 aa17.67■□□□□ 0.42
PDGFRB-201ENST00000261799 ARHGAP35Q9NRY4 1499 aa17.67■□□□□ 0.42
PDGFRB-201ENST00000261799 HIRIP3Q9BW71 556 aaPredicted RBP17.67■□□□□ 0.42
PDGFRB-201ENST00000261799 TULP1O00294 542 aaPredicted RBP17.66■□□□□ 0.42
PDGFRB-201ENST00000261799 NEUROD2Q15784 382 aa17.66■□□□□ 0.42
PDGFRB-201ENST00000261799 WASHC2CQ9Y4E1 1318 aa17.65■□□□□ 0.42
PDGFRB-201ENST00000261799 FMN1Q68DA7 1419 aa17.64■□□□□ 0.42
PDGFRB-201ENST00000261799 NCLP19338 710 aaKnown RBP17.64■□□□□ 0.41
PDGFRB-201ENST00000261799 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
PDGFRB-201ENST00000261799 SPAG9O60271 1321 aaKnown RBP17.64■□□□□ 0.41
PDGFRB-201ENST00000261799 KIF3BO15066 747 aa17.63■□□□□ 0.41
PDGFRB-201ENST00000261799 MORC1Q86VD1 984 aa17.62■□□□□ 0.41
PDGFRB-201ENST00000261799 ABCC8Q09428 1581 aa17.62■□□□□ 0.41
PDGFRB-201ENST00000261799 ANKRD30AQ9BXX3 1397 aa17.62■□□□□ 0.41
PDGFRB-201ENST00000261799 CC2D1BQ5T0F9 858 aaKnown RBP17.6■□□□□ 0.41
PDGFRB-201ENST00000261799 MS4A1P11836 297 aa17.6■□□□□ 0.41
PDGFRB-201ENST00000261799 ZRSR1Q15695 479 aaKnown RBP17.59■□□□□ 0.41
PDGFRB-201ENST00000261799 JPH4Q96JJ6 628 aa17.59■□□□□ 0.41
PDGFRB-201ENST00000261799 EIF3AQ14152 1382 aaKnown RBP17.58■□□□□ 0.41
PDGFRB-201ENST00000261799 RSPH4AQ5TD94 716 aa17.58■□□□□ 0.4
PDGFRB-201ENST00000261799 ZNF330Q9Y3S2 320 aaPredicted RBP17.57■□□□□ 0.4
PDGFRB-201ENST00000261799 NGDNQ8NEJ9 315 aaKnown RBP17.56■□□□□ 0.4
PDGFRB-201ENST00000261799 G3V3G9 751 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms