RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 EEA1Q15075 1411 aa11.65□□□□□ -0.54
PTCD3-201ENST00000254630 RRP7BPQ9NSQ0 103 aa11.65□□□□□ -0.54
PTCD3-201ENST00000254630 SENP3Q9H4L4 574 aaPredicted RBP11.64□□□□□ -0.55
PTCD3-201ENST00000254630 C14orf37Q86TY3 774 aa11.63□□□□□ -0.55
PTCD3-201ENST00000254630 A0A0G2JS52 829 aa11.63□□□□□ -0.55
PTCD3-201ENST00000254630 CEP162Q5TB80 1403 aa11.63□□□□□ -0.55
PTCD3-201ENST00000254630 WRNQ14191 1432 aaPredicted RBP eCLIP11.62□□□□□ -0.55
PTCD3-201ENST00000254630 PLEKHD1A6NEE1 506 aa11.62□□□□□ -0.55
PTCD3-201ENST00000254630 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
PTCD3-201ENST00000254630 EIF4G1Q04637 1599 aaKnown RBP11.61□□□□□ -0.55
PTCD3-201ENST00000254630 KIF27Q86VH2 1401 aa11.61□□□□□ -0.55
PTCD3-201ENST00000254630 MRS2Q9HD23 443 aa11.61□□□□□ -0.55
PTCD3-201ENST00000254630 ARID4BQ4LE39 1312 aaPredicted RBP11.6□□□□□ -0.55
PTCD3-201ENST00000254630 PLEKHG5O94827 1062 aa11.59□□□□□ -0.55
PTCD3-201ENST00000254630 CCDC136Q96JN2 1154 aa11.59□□□□□ -0.55
PTCD3-201ENST00000254630 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
PTCD3-201ENST00000254630 BAZ1AQ9NRL2 1556 aaPredicted RBP11.58□□□□□ -0.56
PTCD3-201ENST00000254630 EIF4G2P78344 907 aaKnown RBP eCLIP11.57□□□□□ -0.56
PTCD3-201ENST00000254630 MYO15BQ96JP2 1530 aa11.56□□□□□ -0.56
PTCD3-201ENST00000254630 HIRIP3Q9BW71 556 aaPredicted RBP11.55□□□□□ -0.56
PTCD3-201ENST00000254630 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
PTCD3-201ENST00000254630 CFDP1Q9UEE9 299 aaPredicted RBP11.53□□□□□ -0.56
PTCD3-201ENST00000254630 RGL3Q3MIN7 710 aa11.52□□□□□ -0.57
PTCD3-201ENST00000254630 CFAP53Q96M91 514 aa11.51□□□□□ -0.57
PTCD3-201ENST00000254630 IRX6P78412 446 aaPredicted RBP11.49□□□□□ -0.57
PTCD3-201ENST00000254630 CDCA8Q53HL2 280 aa11.49□□□□□ -0.57
PTCD3-201ENST00000254630 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
PTCD3-201ENST00000254630 KNSTRNQ9Y448 316 aa11.46□□□□□ -0.57
PTCD3-201ENST00000254630 NBR1Q14596 966 aa11.46□□□□□ -0.58
PTCD3-201ENST00000254630 CCNB3Q8WWL7 1395 aa11.46□□□□□ -0.58
PTCD3-201ENST00000254630 MIER1Q8N108 512 aa11.46□□□□□ -0.58
PTCD3-201ENST00000254630 CARD11Q9BXL7 1154 aa11.46□□□□□ -0.58
PTCD3-201ENST00000254630 KANK1Q14678 1352 aa11.45□□□□□ -0.58
PTCD3-201ENST00000254630 PPM1GO15355 546 aaPredicted RBP11.44□□□□□ -0.58
PTCD3-201ENST00000254630 ARXQ96QS3 562 aa11.44□□□□□ -0.58
PTCD3-201ENST00000254630 DDRGK1Q96HY6 314 aa11.43□□□□□ -0.58
PTCD3-201ENST00000254630 CUX2O14529 1486 aa11.43□□□□□ -0.58
PTCD3-201ENST00000254630 POGKQ9P215 609 aa11.43□□□□□ -0.58
PTCD3-201ENST00000254630 FHAD1B1AJZ9 1412 aa11.43□□□□□ -0.58
PTCD3-201ENST00000254630 CASC1Q6TDU7 716 aa11.42□□□□□ -0.58
PTCD3-201ENST00000254630 CDK11BP21127 795 aaKnown RBP11.41□□□□□ -0.58
PTCD3-201ENST00000254630 BECN1Q14457 450 aa11.41□□□□□ -0.58
PTCD3-201ENST00000254630 MAPK8IP3Q9UPT6 1336 aa11.41□□□□□ -0.58
PTCD3-201ENST00000254630 LAS1LQ9Y4W2 734 aaKnown RBP11.41□□□□□ -0.58
PTCD3-201ENST00000254630 SMARCA2P51531 1590 aa11.41□□□□□ -0.58
PTCD3-201ENST00000254630 FTSJ3Q8IY81 847 aaKnown RBP11.4□□□□□ -0.58
PTCD3-201ENST00000254630 NCLP19338 710 aaKnown RBP11.4□□□□□ -0.58
PTCD3-201ENST00000254630 ARHGAP35Q9NRY4 1499 aa11.38□□□□□ -0.59
PTCD3-201ENST00000254630 CARMIL1Q5VZK9 1371 aa11.38□□□□□ -0.59
PTCD3-201ENST00000254630 NUDCQ9Y266 331 aa11.37□□□□□ -0.59
PTCD3-201ENST00000254630 LMOD2Q6P5Q4 547 aa11.37□□□□□ -0.59
PTCD3-201ENST00000254630 EIF5BO60841 1220 aaKnown RBP11.37□□□□□ -0.59
PTCD3-201ENST00000254630 CECR2Q9BXF3 1484 aa11.37□□□□□ -0.59
PTCD3-201ENST00000254630 CC2D1BQ5T0F9 858 aaKnown RBP11.36□□□□□ -0.59
PTCD3-201ENST00000254630 ABCC8Q09428 1581 aa11.36□□□□□ -0.59
PTCD3-201ENST00000254630 SENP3-EIF4A1A0A087X0R7 540 aa11.34□□□□□ -0.59
PTCD3-201ENST00000254630 TRHP20396 242 aaPredicted RBP11.34□□□□□ -0.59
PTCD3-201ENST00000254630 PNNQ9H307 717 aaKnown RBP11.34□□□□□ -0.59
PTCD3-201ENST00000254630 TNNT2P45379 298 aaPredicted RBP11.34□□□□□ -0.59
PTCD3-201ENST00000254630 CCDC88BA6NC98 1476 aa11.33□□□□□ -0.6
PTCD3-201ENST00000254630 NPHP1O15259 732 aa11.33□□□□□ -0.6
PTCD3-201ENST00000254630 NEUROD2Q15784 382 aa11.33□□□□□ -0.6
PTCD3-201ENST00000254630 GOLGA6L22H0YM25 854 aa11.32□□□□□ -0.6
PTCD3-201ENST00000254630 HDGFP51858 240 aaKnown RBP11.32□□□□□ -0.6
PTCD3-201ENST00000254630 CARMIL2Q6F5E8 1435 aa11.32□□□□□ -0.6
PTCD3-201ENST00000254630 TMF1P82094 1093 aa11.32□□□□□ -0.6
PTCD3-201ENST00000254630 SIN3AQ96ST3 1273 aa11.31□□□□□ -0.6
PTCD3-201ENST00000254630 MLECQ14165 292 aa11.31□□□□□ -0.6
PTCD3-201ENST00000254630 SOGA1O94964 1423 aa11.31□□□□□ -0.6
PTCD3-201ENST00000254630 PDS5BQ9NTI5 1447 aa11.31□□□□□ -0.6
PTCD3-201ENST00000254630 WIZO95785 1651 aa11.31□□□□□ -0.6
PTCD3-201ENST00000254630 TOP2AP11388 1531 aaKnown RBP11.3□□□□□ -0.6
PTCD3-201ENST00000254630 U2SURPO15042 1029 aaKnown RBP11.3□□□□□ -0.6
PTCD3-201ENST00000254630 MROH2BQ7Z745 1585 aa11.3□□□□□ -0.6
PTCD3-201ENST00000254630 OS9Q13438 667 aaPredicted RBP11.29□□□□□ -0.6
PTCD3-201ENST00000254630 DCAF11Q8TEB1 546 aa11.29□□□□□ -0.6
PTCD3-201ENST00000254630 ZRSR1Q15695 479 aaKnown RBP11.28□□□□□ -0.6
PTCD3-201ENST00000254630 CHMP4BQ9H444 224 aaKnown RBP11.28□□□□□ -0.6
PTCD3-201ENST00000254630 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.6
PTCD3-201ENST00000254630 SRPK2P78362 688 aaKnown RBP11.27□□□□□ -0.6
PTCD3-201ENST00000254630 FRAT1Q92837 279 aaPredicted RBP11.27□□□□□ -0.6
PTCD3-201ENST00000254630 TPRNQ4KMQ1 711 aa11.27□□□□□ -0.61
PTCD3-201ENST00000254630 SUPT16HQ9Y5B9 1047 aaKnown RBP11.27□□□□□ -0.61
PTCD3-201ENST00000254630 MS4A1P11836 297 aa11.26□□□□□ -0.61
PTCD3-201ENST00000254630 ANP32EQ9BTT0 268 aa11.26□□□□□ -0.61
PTCD3-201ENST00000254630 GLIPR1L2Q4G1C9 344 aa11.26□□□□□ -0.61
PTCD3-201ENST00000254630 TRIM44Q96DX7 344 aaPredicted RBP11.25□□□□□ -0.61
PTCD3-201ENST00000254630 TULP1O00294 542 aaPredicted RBP11.24□□□□□ -0.61
PTCD3-201ENST00000254630 MORC1Q86VD1 984 aa11.23□□□□□ -0.61
PTCD3-201ENST00000254630 GOLGA2Q08379 1002 aa11.23□□□□□ -0.61
PTCD3-201ENST00000254630 SOX12O15370 315 aa11.22□□□□□ -0.61
PTCD3-201ENST00000254630 SAFB2Q14151 953 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTCD3-201ENST00000254630 VPS8Q8N3P4 1428 aa11.22□□□□□ -0.61
PTCD3-201ENST00000254630 PTMAP06454 111 aaKnown RBP11.22□□□□□ -0.61
PTCD3-201ENST00000254630 FMN1Q68DA7 1419 aa11.22□□□□□ -0.61
PTCD3-201ENST00000254630 TAOK2Q9UL54 1235 aa11.22□□□□□ -0.61
PTCD3-201ENST00000254630 HDGFL2Q7Z4V5 671 aaPredicted RBP11.21□□□□□ -0.61
PTCD3-201ENST00000254630 ROCK2O75116 1388 aaKnown RBP11.21□□□□□ -0.61
PTCD3-201ENST00000254630 HSP90AB1P08238 724 aaKnown RBP11.21□□□□□ -0.61
PTCD3-201ENST00000254630 STK26Q9P289 416 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms