RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 RIOK3O14730 519 aaKnown RBP14.55□□□□□ -0.08
CXCR4-201ENST00000241393 CHGAP10645 457 aaKnown RBP14.55□□□□□ -0.08
CXCR4-201ENST00000241393 RASEFQ8IZ41 740 aa14.55□□□□□ -0.08
CXCR4-201ENST00000241393 FARP1Q9Y4F1 1045 aaPredicted RBP14.54□□□□□ -0.08
CXCR4-201ENST00000241393 PRKAR2AP13861 404 aaKnown RBP14.52□□□□□ -0.08
CXCR4-201ENST00000241393 HAP1P54257 671 aaPredicted RBP14.52□□□□□ -0.08
CXCR4-201ENST00000241393 CHADLQ6NUI6 762 aa14.52□□□□□ -0.09
CXCR4-201ENST00000241393 FXR2P51116 673 aaKnown RBP eCLIP14.5□□□□□ -0.09
CXCR4-201ENST00000241393 CHRDL2Q6WN34 429 aa14.49□□□□□ -0.09
CXCR4-201ENST00000241393 HS6ST3Q8IZP7 471 aa14.49□□□□□ -0.09
CXCR4-201ENST00000241393 PAK3O75914 559 aaPredicted RBP14.48□□□□□ -0.09
CXCR4-201ENST00000241393 VGFO15240 615 aaPredicted RBP14.47□□□□□ -0.09
CXCR4-201ENST00000241393 SPRYD3Q8NCJ5 442 aa14.46□□□□□ -0.1
CXCR4-201ENST00000241393 PAXIP1Q6ZW49 1069 aaPredicted RBP14.45□□□□□ -0.1
CXCR4-201ENST00000241393 CFAP44Q96MT7 982 aa14.42□□□□□ -0.1
CXCR4-201ENST00000241393 RNF25Q96BH1 459 aaPredicted RBP14.42□□□□□ -0.1
CXCR4-201ENST00000241393 TSPYL2Q9H2G4 693 aaPredicted RBP14.42□□□□□ -0.1
CXCR4-201ENST00000241393 PYGBP11216 843 aa14.4□□□□□ -0.1
CXCR4-201ENST00000241393 ZNF467Q7Z7K2 595 aaPredicted RBP14.38□□□□□ -0.11
CXCR4-201ENST00000241393 SGIP1Q9BQI5 828 aa14.38□□□□□ -0.11
CXCR4-201ENST00000241393 VSIG10Q8N0Z9 540 aa14.37□□□□□ -0.11
CXCR4-201ENST00000241393 DNAJC5Q9H3Z4 198 aa14.37□□□□□ -0.11
CXCR4-201ENST00000241393 STK25O00506 426 aa14.36□□□□□ -0.11
CXCR4-201ENST00000241393 PIP4P2Q8N4L2 257 aa14.36□□□□□ -0.11
CXCR4-201ENST00000241393 RYDENQ9NUL5 291 aaKnown RBP14.33□□□□□ -0.11
CXCR4-201ENST00000241393 STK24Q9Y6E0 443 aa14.26□□□□□ -0.13
CXCR4-201ENST00000241393 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.26□□□□□ -0.13
CXCR4-201ENST00000241393 ZFP91Q96JP5 570 aaPredicted RBP14.26□□□□□ -0.13
CXCR4-201ENST00000241393 CCDC61Q9Y6R9 512 aa14.25□□□□□ -0.13
CXCR4-201ENST00000241393 PDAP1Q13442 181 aaKnown RBP14.24□□□□□ -0.13
CXCR4-201ENST00000241393 BCL11BQ9C0K0 894 aaPredicted RBP14.24□□□□□ -0.13
CXCR4-201ENST00000241393 ZNF579Q8NAF0 562 aaKnown RBP14.23□□□□□ -0.13
CXCR4-201ENST00000241393 PCDHB13Q9Y5F0 798 aa14.17□□□□□ -0.14
CXCR4-201ENST00000241393 CD44P16070 742 aaKnown RBP14.16□□□□□ -0.14
CXCR4-201ENST00000241393 ZRANB1Q9UGI0 708 aa14.15□□□□□ -0.14
CXCR4-201ENST00000241393 PCDHB8Q9UN66 801 aa14.13□□□□□ -0.15
CXCR4-201ENST00000241393 PSEN1P49768 467 aa14.12□□□□□ -0.15
CXCR4-201ENST00000241393 NKX1-1Q15270 411 aaPredicted RBP14.1□□□□□ -0.15
CXCR4-201ENST00000241393 TSHZ2Q9NRE2 1034 aa14.1□□□□□ -0.15
CXCR4-201ENST00000241393 KIF12Q96FN5 646 aa14.1□□□□□ -0.15
CXCR4-201ENST00000241393 GTPBP6O43824 516 aaPredicted RBP14.09□□□□□ -0.15
CXCR4-201ENST00000241393 CCDC180Q9P1Z9 1646 aa14.08□□□□□ -0.15
CXCR4-201ENST00000241393 BCANQ96GW7 911 aa14.08□□□□□ -0.16
CXCR4-201ENST00000241393 MAP3K13O43283 966 aa14.07□□□□□ -0.16
CXCR4-201ENST00000241393 IFNL1Q8IU54 200 aa14.04□□□□□ -0.16
CXCR4-201ENST00000241393 KDM2AQ9Y2K7 1162 aa14.01□□□□□ -0.17
CXCR4-201ENST00000241393 C19orf67A6NJJ6 358 aa13.99□□□□□ -0.17
CXCR4-201ENST00000241393 PHF12Q96QT6 1004 aa13.97□□□□□ -0.17
CXCR4-201ENST00000241393 GOLGA2Q08379 1002 aa13.95□□□□□ -0.18
CXCR4-201ENST00000241393 SOX12O15370 315 aa13.95□□□□□ -0.18
CXCR4-201ENST00000241393 CLCN6P51797 869 aa13.95□□□□□ -0.18
CXCR4-201ENST00000241393 NLRP6P59044 892 aa13.93□□□□□ -0.18
CXCR4-201ENST00000241393 CABP2Q9NPB3 220 aa13.92□□□□□ -0.18
CXCR4-201ENST00000241393 ZCCHC6Q5VYS8 1495 aaKnown RBP13.88□□□□□ -0.19
CXCR4-201ENST00000241393 EFCAB3Q8N7B9 438 aa13.85□□□□□ -0.19
CXCR4-201ENST00000241393 TMEM106CQ9BVX2 250 aa13.85□□□□□ -0.19
CXCR4-201ENST00000241393 MFRPQ9BY79 579 aa13.85□□□□□ -0.19
CXCR4-201ENST00000241393 HAX1O00165 279 aa13.85□□□□□ -0.19
CXCR4-201ENST00000241393 NBR1Q14596 966 aa13.83□□□□□ -0.2
CXCR4-201ENST00000241393 MS4A3Q96HJ5 214 aa13.83□□□□□ -0.2
CXCR4-201ENST00000241393 TIE1P35590 1138 aa13.82□□□□□ -0.2
CXCR4-201ENST00000241393 MKRN3Q13064 507 aaKnown RBP13.82□□□□□ -0.2
CXCR4-201ENST00000241393 WDR70Q9NW82 654 aa13.82□□□□□ -0.2
CXCR4-201ENST00000241393 P3H3Q8IVL6 736 aa13.77□□□□□ -0.21
CXCR4-201ENST00000241393 PHF8Q9UPP1 1060 aa13.76□□□□□ -0.21
CXCR4-201ENST00000241393 FBXO22Q8NEZ5 403 aa13.75□□□□□ -0.21
CXCR4-201ENST00000241393 TTLL13PA6NNM8 815 aa13.69□□□□□ -0.22
CXCR4-201ENST00000241393 BMP2KQ9NSY1 1161 aaPredicted RBP13.65□□□□□ -0.22
CXCR4-201ENST00000241393 TRPC6Q9Y210 931 aa13.65□□□□□ -0.22
CXCR4-201ENST00000241393 GALR2O43603 387 aaPredicted RBP13.63□□□□□ -0.23
CXCR4-201ENST00000241393 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.63□□□□□ -0.23
CXCR4-201ENST00000241393 PPP1R37O75864 691 aa13.63□□□□□ -0.23
CXCR4-201ENST00000241393 SHROOM4Q9ULL8 1493 aa13.62□□□□□ -0.23
CXCR4-201ENST00000241393 TRIM35Q9UPQ4 493 aa13.62□□□□□ -0.23
CXCR4-201ENST00000241393 CADPS2Q86UW7 1296 aa13.61□□□□□ -0.23
CXCR4-201ENST00000241393 DCAF1Q9Y4B6 1507 aa13.61□□□□□ -0.23
CXCR4-201ENST00000241393 PDE4AP27815 886 aa13.59□□□□□ -0.23
CXCR4-201ENST00000241393 MS4A4AQ96JQ5 239 aa13.58□□□□□ -0.24
CXCR4-201ENST00000241393 IER5LQ5T953 404 aa13.56□□□□□ -0.24
CXCR4-201ENST00000241393 G3V3G9 751 aa13.54□□□□□ -0.24
CXCR4-201ENST00000241393 EVX2Q03828 476 aa13.53□□□□□ -0.24
CXCR4-201ENST00000241393 ILDR1Q86SU0 546 aaPredicted RBP13.53□□□□□ -0.24
CXCR4-201ENST00000241393 TULP1O00294 542 aaPredicted RBP13.51□□□□□ -0.25
CXCR4-201ENST00000241393 E2F4Q16254 413 aa13.51□□□□□ -0.25
CXCR4-201ENST00000241393 ASTLQ6HA08 431 aaPredicted RBP13.51□□□□□ -0.25
CXCR4-201ENST00000241393 ATMINO43313 823 aaPredicted RBP13.5□□□□□ -0.25
CXCR4-201ENST00000241393 ATN1P54259 1190 aaPredicted RBP13.49□□□□□ -0.25
CXCR4-201ENST00000241393 POTEHQ6S545 545 aa13.49□□□□□ -0.25
CXCR4-201ENST00000241393 DCBLD2Q96PD2 775 aa13.49□□□□□ -0.25
CXCR4-201ENST00000241393 LARP6Q9BRS8 491 aaKnown RBP13.49□□□□□ -0.25
CXCR4-201ENST00000241393 ARHGEF1Q92888 912 aaKnown RBP13.48□□□□□ -0.25
CXCR4-201ENST00000241393 OCEL1Q9H607 264 aa13.48□□□□□ -0.25
CXCR4-201ENST00000241393 KCNV2Q8TDN2 545 aa13.47□□□□□ -0.25
CXCR4-201ENST00000241393 TPRNQ4KMQ1 711 aa13.47□□□□□ -0.25
CXCR4-201ENST00000241393 DDX27Q96GQ7 796 aaKnown RBP13.47□□□□□ -0.25
CXCR4-201ENST00000241393 GABBR2O75899 941 aa13.46□□□□□ -0.26
CXCR4-201ENST00000241393 PLCG2P16885 1265 aa13.46□□□□□ -0.26
CXCR4-201ENST00000241393 CRISPLD2Q9H0B8 497 aa13.45□□□□□ -0.26
CXCR4-201ENST00000241393 MFSD10Q14728 455 aa13.44□□□□□ -0.26
CXCR4-201ENST00000241393 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms