RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 COTL1Q14019 142 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 TEX261Q6UWH6 196 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 LINC00269Q8N2A0 174 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 BORCS7Q96B45 105 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 GFRA4Q9GZZ7 299 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 FAM30AQ9NZY2 134 aa9.71□□□□□ -0.86
LINC00643-205ENST00000623219 SRRM2Q9UQ35 2752 aaKnown RBP9.71□□□□□ -0.86
LINC00643-205ENST00000623219 A0A1B0GUV1 79 aa9.7□□□□□ -0.86
LINC00643-205ENST00000623219 UBE2L6O14933 153 aa9.7□□□□□ -0.86
LINC00643-205ENST00000623219 AMTP48728 403 aa9.7□□□□□ -0.86
LINC00643-205ENST00000623219 TSKUQ8WUA8 353 aa9.7□□□□□ -0.86
LINC00643-205ENST00000623219 OSTCQ9NRP0 149 aa9.7□□□□□ -0.86
LINC00643-205ENST00000623219 FAM231BA6NCW3 169 aa9.69□□□□□ -0.86
LINC00643-205ENST00000623219 HIGD1CA8MV81 97 aa9.69□□□□□ -0.86
LINC00643-205ENST00000623219 SMR3BP02814 79 aaPredicted RBP9.69□□□□□ -0.86
LINC00643-205ENST00000623219 REG3AQ06141 175 aa9.69□□□□□ -0.86
LINC00643-205ENST00000623219 C20orf203Q8NBC4 194 aa9.69□□□□□ -0.86
LINC00643-205ENST00000623219 A0A1B0GUT8 65 aa9.68□□□□□ -0.86
LINC00643-205ENST00000623219 USP17L23D6RBM5 183 aa9.68□□□□□ -0.86
LINC00643-205ENST00000623219 FAM229AH3BQW9 127 aa9.68□□□□□ -0.86
LINC00643-205ENST00000623219 FAM74A3Q4VXF1 159 aa9.68□□□□□ -0.86
LINC00643-205ENST00000623219 RPL39LQ96EH5 51 aaKnown RBP9.68□□□□□ -0.86
LINC00643-205ENST00000623219 IGLV4-60A0A075B6I1 120 aa9.67□□□□□ -0.86
LINC00643-205ENST00000623219 TRAV8-4A0A0B4J246 113 aa9.67□□□□□ -0.86
LINC00643-205ENST00000623219 NCR2O95944 276 aa9.67□□□□□ -0.86
LINC00643-205ENST00000623219 LINC01620Q4KN68 170 aa9.67□□□□□ -0.86
LINC00643-205ENST00000623219 KRTAP26-1Q6PEX3 210 aa9.67□□□□□ -0.86
LINC00643-205ENST00000623219 DEFB104AQ8WTQ1 72 aa9.66□□□□□ -0.86
LINC00643-205ENST00000623219 ISOC2Q96AB3 205 aa9.66□□□□□ -0.86
LINC00643-205ENST00000623219 TMEM191AQ9H0A3 160 aa9.66□□□□□ -0.86
LINC00643-205ENST00000623219 V9GYV3 84 aa9.66□□□□□ -0.86
LINC00643-205ENST00000623219 SDHAF1A6NFY7 115 aa9.65□□□□□ -0.86
LINC00643-205ENST00000623219 APCSP02743 223 aa9.65□□□□□ -0.86
LINC00643-205ENST00000623219 TMEM241Q24JQ0 296 aa9.65□□□□□ -0.86
LINC00643-205ENST00000623219 SMDT1Q9H4I9 107 aa9.65□□□□□ -0.86
LINC00643-205ENST00000623219 IGLV10-54A0A075B6I4 117 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 TRBV6-5A0A0K0K1A5 114 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 H7C423 109 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 INAFM2P0DMQ5 153 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 RPL23P62829 140 aaKnown RBP9.64□□□□□ -0.87
LINC00643-205ENST00000623219 PEA15Q15121 130 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 NAT8Q9UHE5 227 aa9.64□□□□□ -0.87
LINC00643-205ENST00000623219 PRSS1P07477 247 aa9.63□□□□□ -0.87
LINC00643-205ENST00000623219 ADIRFQ15847 76 aa9.63□□□□□ -0.87
LINC00643-205ENST00000623219 SCXQ7RTU7 201 aa9.63□□□□□ -0.87
LINC00643-205ENST00000623219 MRAP2Q96G30 205 aa9.63□□□□□ -0.87
LINC00643-205ENST00000623219 MYCBP2O75592 4640 aa9.63□□□□□ -0.87
LINC00643-205ENST00000623219 C9JQL5 133 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 I3L3M4 83 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 RIGQ13278 110 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 AMMECR1LQ6DCA0 310 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 DGAT2L7PQ6IED9 249 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 CLRN3Q8NCR9 226 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 NUP35Q8NFH5 326 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 RNF185Q96GF1 192 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 NAT8BQ9UHF3 227 aa9.62□□□□□ -0.87
LINC00643-205ENST00000623219 HERC1Q15751 4861 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-205ENST00000623219 IGKV2-29A2NJV5 120 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-205ENST00000623219 ZNF25P17030 456 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-205ENST00000623219 RAB4AP20338 218 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 PMCHP20382 165 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 SRSF3P84103 164 aaKnown RBP9.61□□□□□ -0.87
LINC00643-205ENST00000623219 AMN1Q8IY45 258 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 CHAC1Q9BUX1 264 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 ST20Q9HBF5 79 aa9.61□□□□□ -0.87
LINC00643-205ENST00000623219 GAS8-AS1O95177 125 aa9.6□□□□□ -0.87
LINC00643-205ENST00000623219 LINC00528Q8N1L1 170 aa9.6□□□□□ -0.87
LINC00643-205ENST00000623219 SMIM27A0A1W2PRY6 76 aa9.59□□□□□ -0.87
LINC00643-205ENST00000623219 TSHBP01222 138 aa9.59□□□□□ -0.87
LINC00643-205ENST00000623219 PLA2G1BP04054 148 aaKnown RBP9.59□□□□□ -0.87
LINC00643-205ENST00000623219 FGF6P10767 208 aa9.59□□□□□ -0.87
LINC00643-205ENST00000623219 RPS10P46783 165 aaKnown RBP9.59□□□□□ -0.87
LINC00643-205ENST00000623219 RNASEKQ6P5S7 137 aaKnown RBP9.59□□□□□ -0.87
LINC00643-205ENST00000623219 C9orf163Q8N9P6 203 aa9.59□□□□□ -0.87
LINC00643-205ENST00000623219 TMEM242Q9NWH2 141 aa9.59□□□□□ -0.87
LINC00643-205ENST00000623219 TRBV27A0A0K0K1C4 114 aa9.58□□□□□ -0.88
LINC00643-205ENST00000623219 hDV102S1A0JD36 115 aa9.58□□□□□ -0.88
LINC00643-205ENST00000623219 PPP1R17O96001 155 aa9.58□□□□□ -0.88
LINC00643-205ENST00000623219 POLR2KP53803 58 aaKnown RBP9.58□□□□□ -0.88
LINC00643-205ENST00000623219 CNBPP62633 177 aaKnown RBP9.58□□□□□ -0.88
LINC00643-205ENST00000623219 CIRBP-AS1Q8TBR5 109 aa9.58□□□□□ -0.88
LINC00643-205ENST00000623219 FLG2Q5D862 2391 aaPredicted RBP9.57□□□□□ -0.88
LINC00643-205ENST00000623219 IGKV3OR2-268A0A0C4DH90 116 aa9.57□□□□□ -0.88
LINC00643-205ENST00000623219 ESDP10768 282 aa9.57□□□□□ -0.88
LINC00643-205ENST00000623219 BTF3L4Q96K17 158 aa9.57□□□□□ -0.88
LINC00643-205ENST00000623219 DMBT1Q9UGM3 2413 aaPredicted RBP9.56□□□□□ -0.88
LINC00643-205ENST00000623219 A0A1B0GW15 77 aa9.56□□□□□ -0.88
LINC00643-205ENST00000623219 OR5A1Q8NGJ0 315 aa9.56□□□□□ -0.88
LINC00643-205ENST00000623219 TMEM101Q96IK0 257 aa9.56□□□□□ -0.88
LINC00643-205ENST00000623219 AP5S1Q9NUS5 200 aa9.56□□□□□ -0.88
LINC00643-205ENST00000623219 C7orf77A4D0Y5 90 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 GAGE12HA6NDE8 117 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 SMKR1H3BMG3 65 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 PPP1R2P9O14990 202 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 SUMO2P61956 95 aaKnown RBP9.55□□□□□ -0.88
LINC00643-205ENST00000623219 MRPL52Q86TS9 123 aaKnown RBP9.55□□□□□ -0.88
LINC00643-205ENST00000623219 C15orf56Q8N910 161 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 NRACQ8N912 160 aa9.55□□□□□ -0.88
LINC00643-205ENST00000623219 CHCHD10Q8WYQ3 142 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms