RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GAGE6Q13070 117 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 JMJD8Q96S16 334 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 FHL3Q13643 280 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 CHAC1Q9BUX1 264 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 TRAV12-1A0A0B4J245 112 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 FXYD2P54710 66 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 SEC11AP67812 179 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 RPL24P83731 157 aaKnown RBP7.74□□□□□ -1.17
CUX1-221ENST00000622516 STHQ8IWL8 128 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 GAGE12HA6NDE8 117 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 C11orf86A6NJI1 115 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 K7ERJ3 54 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 RNASE1P07998 156 aaKnown RBP7.73□□□□□ -1.17
CUX1-221ENST00000622516 CEMP1Q6PRD7 247 aaPredicted RBP7.73□□□□□ -1.17
CUX1-221ENST00000622516 TRPT1Q86TN4 253 aaKnown RBP7.73□□□□□ -1.17
CUX1-221ENST00000622516 TEX29Q8N6K0 151 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 IGHV3-38A0A0C4DH36 116 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 C9orf118A6NHY6 69 aa7.73□□□□□ -1.17
CUX1-221ENST00000622516 H3BUT2 72 aa7.72□□□□□ -1.17
CUX1-221ENST00000622516 RNASE13Q5GAN3 156 aaKnown RBP7.72□□□□□ -1.17
CUX1-221ENST00000622516 TEP1Q99973 2627 aaKnown RBP7.72□□□□□ -1.17
CUX1-221ENST00000622516 TRBV6-5A0A0K0K1A5 114 aa7.72□□□□□ -1.17
CUX1-221ENST00000622516 M0R2P5 195 aa7.72□□□□□ -1.17
CUX1-221ENST00000622516 INSP01308 110 aa7.72□□□□□ -1.17
CUX1-221ENST00000622516 PRADC1Q9BSG0 188 aa7.72□□□□□ -1.17
CUX1-221ENST00000622516 IGLV4-69A0A075B6H9 119 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 A8MTW9 85 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 CFAP126Q5VTH2 177 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 C11orf72Q8NBR9 251 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 OR5A1Q8NGJ0 315 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 PHLDA1Q8WV24 401 aaPredicted RBP7.71□□□□□ -1.17
CUX1-221ENST00000622516 RNF183Q96D59 192 aa7.71□□□□□ -1.17
CUX1-221ENST00000622516 TRAV2A0A0B4J234 112 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 H3BRM9 83 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 RPL35AP18077 110 aaKnown RBP7.71□□□□□ -1.18
CUX1-221ENST00000622516 ZNRF2Q8NHG8 242 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 ZNF418Q8TF45 676 aaPredicted RBP7.71□□□□□ -1.18
CUX1-221ENST00000622516 A6NDN8 102 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 B5MCH6 92 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 I3L3M4 83 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 IGHV3-53P01767 116 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 ZNF415Q09FC8 603 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 PMVKQ15126 192 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 TMEM170BQ5T4T1 132 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 C1orf158Q8N1D5 194 aa7.71□□□□□ -1.18
CUX1-221ENST00000622516 IGHV3-64A0A075B6Q5 118 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 ERG28Q9UKR5 140 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 TEX48A0A1B0GUV7 120 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 LY6G6DO95868 133 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 PTH2Q96A98 100 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 NHP2Q9NX24 153 aaKnown RBP7.7□□□□□ -1.18
CUX1-221ENST00000622516 SPCS1Q9Y6A9 102 aa7.7□□□□□ -1.18
CUX1-221ENST00000622516 TRGV1A0A0A0MS02 117 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 HILS1P60008 231 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 PLEKHB2Q96CS7 222 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 SPATA25Q9BR10 227 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 C20orf203Q8NBC4 194 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 HIST1H4GQ99525 98 aa7.69□□□□□ -1.18
CUX1-221ENST00000622516 MYMXA0A1B0GTQ4 84 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 ZNF815PA8K554 130 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 ADARB2-AS1A8MUL3 147 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 A8MWV9 139 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 KRTAP10-3P60369 221 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 TIMM17AQ99595 171 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 C16orf95Q9H693 158 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 HIGD1BQ9P298 99 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.68□□□□□ -1.18
CUX1-221ENST00000622516 IGKV2-29A2NJV5 120 aaPredicted RBP7.68□□□□□ -1.18
CUX1-221ENST00000622516 Q6ZTI0 123 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 CEND1Q8N111 149 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 TMEM141Q96I45 108 aa7.68□□□□□ -1.18
CUX1-221ENST00000622516 INAFM1C9JVW0 142 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 E9PLD3 99 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 J3QR89 54 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 TSPEAR-AS2P59090 65 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 SCGB1D4Q6XE38 83 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 A0A0J9YXV3 536 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 A0A1W2PPM0 123 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 F8WDY8 70 aa7.67□□□□□ -1.18
CUX1-221ENST00000622516 GIG44P09565 113 aaPredicted RBP7.66□□□□□ -1.18
CUX1-221ENST00000622516 SMIM13P0DJ93 91 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 FABP2P12104 132 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 SPATA3Q8NHX4 192 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 PPDPFQ9H3Y8 114 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 NOP10Q9NPE3 64 aaKnown RBP7.66□□□□□ -1.18
CUX1-221ENST00000622516 CSDC2Q9Y534 153 aaKnown RBP7.66□□□□□ -1.18
CUX1-221ENST00000622516 IGLV4-3A0A075B6K6 122 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 RHOHQ15669 191 aa7.66□□□□□ -1.18
CUX1-221ENST00000622516 IGLV1-51P01701 117 aa7.65□□□□□ -1.18
CUX1-221ENST00000622516 FAM104AQ969W3 186 aa7.65□□□□□ -1.18
CUX1-221ENST00000622516 LINC00467Q9BRT7 94 aa7.64□□□□□ -1.19
CUX1-221ENST00000622516 TM2D2Q9BX73 214 aa7.64□□□□□ -1.19
CUX1-221ENST00000622516 SRSF9Q13242 221 aaKnown RBP eCLIP7.64□□□□□ -1.19
CUX1-221ENST00000622516 C19orf73Q9NVV2 129 aa7.64□□□□□ -1.19
CUX1-221ENST00000622516 F8P00451 2351 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 BEAN1Q3B7T3 259 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 CHCHD7Q9BUK0 85 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 C1orf43Q9BWL3 253 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 TRBV7-3A0A075B6L6 115 aa7.63□□□□□ -1.19
CUX1-221ENST00000622516 RS1O15537 224 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms