RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 IGHV4-4A0A075B6R2 117 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 PRSS29PA6NIE9 313 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 M0QY20 66 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 LINC00469Q8N7U9 141 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 NBEAL1Q6ZS30 2694 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 PRSS2P07478 247 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 NAA38Q9BRA0 125 aaKnown RBP11.43□□□□□ -0.58
CPSF1-213ENST00000620219 HIST1H4GQ99525 98 aa11.43□□□□□ -0.58
CPSF1-213ENST00000620219 FAM222AQ5U5X8 452 aa11.42□□□□□ -0.58
CPSF1-213ENST00000620219 SCRT2Q9NQ03 307 aa11.42□□□□□ -0.58
CPSF1-213ENST00000620219 A0A0U1RRA0 63 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 PAX4O43316 350 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 OR5A1Q8NGJ0 315 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 SPATA3Q8NHX4 192 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 K7EQD1 137 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 GYPEP15421 78 aa11.41□□□□□ -0.58
CPSF1-213ENST00000620219 ODF1Q14990 250 aa11.4□□□□□ -0.58
CPSF1-213ENST00000620219 PMVKQ15126 192 aa11.4□□□□□ -0.58
CPSF1-213ENST00000620219 IGHV4-30-4P0DP06 118 aa11.4□□□□□ -0.58
CPSF1-213ENST00000620219 CHAC1Q9BUX1 264 aa11.4□□□□□ -0.58
CPSF1-213ENST00000620219 A0A087WX48 190 aa11.4□□□□□ -0.59
CPSF1-213ENST00000620219 SMAGPQ0VAQ4 97 aa11.4□□□□□ -0.59
CPSF1-213ENST00000620219 RHOHQ15669 191 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 TRBV7-3A0A075B6L6 115 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 F8VRH5 84 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 PLNP26678 52 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 CLPSL2Q6UWE3 100 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 ZNF815PA8K554 130 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 HHLA3Q9XRX5 114 aa11.39□□□□□ -0.59
CPSF1-213ENST00000620219 SLC25A29Q8N8R3 303 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 LOC100131303A0A0U1RQF7 123 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 BEAN1Q3B7T3 259 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 Q9UF83 564 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 TRBV25-1A0A075B6N4 114 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 K7EMI3 77 aa11.38□□□□□ -0.59
CPSF1-213ENST00000620219 NEXN-AS1Q8NBZ9 246 aa11.37□□□□□ -0.59
CPSF1-213ENST00000620219 CITED1Q99966 193 aa11.37□□□□□ -0.59
CPSF1-213ENST00000620219 COX8AP10176 69 aa11.37□□□□□ -0.59
CPSF1-213ENST00000620219 LBHQ53QV2 105 aaPredicted RBP11.37□□□□□ -0.59
CPSF1-213ENST00000620219 TMEM243Q9BU79 118 aa11.37□□□□□ -0.59
CPSF1-213ENST00000620219 Q6ZSN1 163 aa11.37□□□□□ -0.59
CPSF1-213ENST00000620219 TRAV4A0A0B4J268 109 aa11.36□□□□□ -0.59
CPSF1-213ENST00000620219 SPART-AS1P0CW21 52 aa11.36□□□□□ -0.59
CPSF1-213ENST00000620219 BAALCQ8WXS3 180 aa11.36□□□□□ -0.59
CPSF1-213ENST00000620219 TOMM6Q96B49 74 aa11.36□□□□□ -0.59
CPSF1-213ENST00000620219 A0A0J9YXV3 536 aa11.36□□□□□ -0.59
CPSF1-213ENST00000620219 IGLV2-18A0A075B6J9 118 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 IGKV2D-26A0A0A0MRZ7 120 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 TMEM141Q96I45 108 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 RETNQ9HD89 108 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 TENM1Q9UKZ4 2725 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 C11orf68Q9H3H3 251 aaKnown RBP11.35□□□□□ -0.59
CPSF1-213ENST00000620219 LINC01549A6NIU2 74 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 H7C2G1 150 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 Q1RN00 199 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 C20orf203Q8NBC4 194 aa11.35□□□□□ -0.59
CPSF1-213ENST00000620219 RNASE8Q8TDE3 154 aaKnown RBP11.35□□□□□ -0.59
CPSF1-213ENST00000620219 IGHV4-28A0A0C4DH34 117 aa11.34□□□□□ -0.59
CPSF1-213ENST00000620219 ZNF625Q96I27 306 aaPredicted RBP11.34□□□□□ -0.59
CPSF1-213ENST00000620219 KIF25-AS1Q9Y6Z4 181 aa11.34□□□□□ -0.59
CPSF1-213ENST00000620219 POLR2KP53803 58 aaKnown RBP11.34□□□□□ -0.59
CPSF1-213ENST00000620219 VWFP04275 2813 aa11.34□□□□□ -0.59
CPSF1-213ENST00000620219 ATP5G1P05496 136 aa11.33□□□□□ -0.6
CPSF1-213ENST00000620219 MEIG1Q5JSS6 88 aa11.33□□□□□ -0.6
CPSF1-213ENST00000620219 MRPS16Q9Y3D3 137 aaKnown RBP11.33□□□□□ -0.6
CPSF1-213ENST00000620219 LINC00315P59091 139 aa11.33□□□□□ -0.6
CPSF1-213ENST00000620219 RS1O15537 224 aa11.33□□□□□ -0.6
CPSF1-213ENST00000620219 NPC2P61916 151 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 SFTA2Q6UW10 78 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 ATP6V0E2Q8NHE4 81 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 A6NDN8 102 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 CYSRT1A8MQ03 144 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 G3V4G9 280 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 H3BRM9 83 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 C11orf72Q8NBR9 251 aa11.32□□□□□ -0.6
CPSF1-213ENST00000620219 LINC00467Q9BRT7 94 aa11.31□□□□□ -0.6
CPSF1-213ENST00000620219 TRAV26-1A0A087WT03 109 aa11.31□□□□□ -0.6
CPSF1-213ENST00000620219 TRBV27A0A0K0K1C4 114 aa11.31□□□□□ -0.6
CPSF1-213ENST00000620219 DNAJC30Q96LL9 226 aa11.31□□□□□ -0.6
CPSF1-213ENST00000620219 NHP2Q9NX24 153 aaKnown RBP11.31□□□□□ -0.6
CPSF1-213ENST00000620219 FGF6P10767 208 aa11.31□□□□□ -0.6
CPSF1-213ENST00000620219 NXPH4O95158 308 aa11.3□□□□□ -0.6
CPSF1-213ENST00000620219 APOMO95445 188 aa11.3□□□□□ -0.6
CPSF1-213ENST00000620219 C11orf86A6NJI1 115 aa11.3□□□□□ -0.6
CPSF1-213ENST00000620219 TSHBP01222 138 aa11.3□□□□□ -0.6
CPSF1-213ENST00000620219 TIMM21Q9BVV7 248 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 CST9LQ9H4G1 147 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 K7EP13 123 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 SPINK8P0C7L1 97 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 Q6ZUT4 128 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 PRO0255Q9UI72 69 aa11.29□□□□□ -0.6
CPSF1-213ENST00000620219 DAZ2Q13117 558 aaKnown RBP11.29□□□□□ -0.6
CPSF1-213ENST00000620219 DAZ4Q86SG3 579 aaKnown RBP11.29□□□□□ -0.6
CPSF1-213ENST00000620219 DAZ3Q9NR90 486 aaKnown RBP11.29□□□□□ -0.6
CPSF1-213ENST00000620219 BVES-AS1Q5T3Y7 98 aa11.28□□□□□ -0.6
CPSF1-213ENST00000620219 TRBV6-5A0A0K0K1A5 114 aa11.28□□□□□ -0.6
CPSF1-213ENST00000620219 ORAOV1Q8WV07 137 aa11.28□□□□□ -0.6
CPSF1-213ENST00000620219 ANGP03950 147 aaKnown RBP11.27□□□□□ -0.6
CPSF1-213ENST00000620219 SCGB1C2P0DMR2 95 aa11.27□□□□□ -0.6
CPSF1-213ENST00000620219 POM121L12Q8N7R1 296 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms