RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HIST1H2BOP23527 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BBP33778 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BDP58876 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BCP62807 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST2H2BEQ16778 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 NIT1Q86X76 327 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BHQ93079 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BNQ99877 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BMQ99879 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 DNAH10Q8IVF4 4471 aa11.17□□□□□ -0.62
CCDC28A-202ENST00000611852 TRBV6-5A0A0K0K1A5 114 aa11.17□□□□□ -0.62
CCDC28A-202ENST00000611852 IQCJQ1A5X6 159 aa11.17□□□□□ -0.62
CCDC28A-202ENST00000611852 MRPL51Q4U2R6 128 aaKnown RBP11.17□□□□□ -0.62
CCDC28A-202ENST00000611852 TRBV25-1A0A075B6N4 114 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 SDHAF1A6NFY7 115 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 IBA57-AS1B1ANH7 110 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 SMKR1H3BMG3 65 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 NCR2O95944 276 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 APCSP02743 223 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 FRAS1Q86XX4 4008 aa11.16□□□□□ -0.62
CCDC28A-202ENST00000611852 PRSS29PA6NIE9 313 aa11.15□□□□□ -0.62
CCDC28A-202ENST00000611852 DEFB104AQ8WTQ1 72 aa11.15□□□□□ -0.62
CCDC28A-202ENST00000611852 CHCHD5Q9BSY4 110 aa11.15□□□□□ -0.62
CCDC28A-202ENST00000611852 CHCHD7Q9BUK0 85 aa11.15□□□□□ -0.62
CCDC28A-202ENST00000611852 A0A087WX48 190 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 IGHV1-24A0A0C4DH33 117 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 COTL1Q14019 142 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 Q6ZRN7 208 aaPredicted RBP11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 NRACQ8N912 160 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 ST20Q9HBF5 79 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 TMEM262E9PQX1 116 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 PPP1R17O96001 155 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 TMEM70Q9BUB7 260 aa11.14□□□□□ -0.63
CCDC28A-202ENST00000611852 POLR2KP53803 58 aaKnown RBP11.13□□□□□ -0.63
CCDC28A-202ENST00000611852 NDUFA6P56556 154 aa11.13□□□□□ -0.63
CCDC28A-202ENST00000611852 LAGE3Q14657 143 aa11.13□□□□□ -0.63
CCDC28A-202ENST00000611852 MPV17L2Q567V2 206 aa11.13□□□□□ -0.63
CCDC28A-202ENST00000611852 NFE4Q86UQ8 179 aa11.13□□□□□ -0.63
CCDC28A-202ENST00000611852 I3L3M4 83 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 CKS2P33552 79 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 AMTP48728 403 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 PKIAP61925 76 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 SNRPEP62304 92 aaKnown RBP11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 TNP2Q05952 138 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 TMEM243Q9BU79 118 aa11.12□□□□□ -0.63
CCDC28A-202ENST00000611852 TRBV27A0A0K0K1C4 114 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 LOC105371267A0A1B0GV96 52 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 C5orf52A6NGY3 159 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 D6R8Y8 96 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 PMCHP20382 165 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 GAGE6Q13070 117 aa11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 EPPK1P58107 5090 aaKnown RBP11.11□□□□□ -0.63
CCDC28A-202ENST00000611852 PPBPP02775 128 aa11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 SUMO2P61956 95 aaKnown RBP11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 Q8N976 141 aa11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 Q9HAA7 133 aa11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 KLK12Q9UKR0 248 aa11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 FAT2Q9NYQ8 4349 aa11.1□□□□□ -0.63
CCDC28A-202ENST00000611852 A0A1B0GVY2 172 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 TNFRSF6BO95407 300 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 KIAA1644Q3SXP7 199 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 DNAH17Q9UFH2 4485 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 VCYO14598 125 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 TSHBP01222 138 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 RBX1P62877 108 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 ORMDL3Q8N138 153 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 C20orf78Q9BR46 151 aa11.09□□□□□ -0.63
CCDC28A-202ENST00000611852 TRAV8-3A0A0A6YYJ7 113 aa11.08□□□□□ -0.64
CCDC28A-202ENST00000611852 COA6Q5JTJ3 125 aaKnown RBP11.08□□□□□ -0.64
CCDC28A-202ENST00000611852 NPYP01303 97 aa11.07□□□□□ -0.64
CCDC28A-202ENST00000611852 ANGP03950 147 aaKnown RBP11.07□□□□□ -0.64
CCDC28A-202ENST00000611852 A0A1B0GUV1 79 aa11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 UBE2L6O14933 153 aa11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 RPL32P62910 135 aaKnown RBP11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 Q0VG73 95 aa11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 UBE2WQ96B02 151 aa11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 PRELID3AQ96N28 172 aa11.06□□□□□ -0.64
CCDC28A-202ENST00000611852 ESDP10768 282 aa11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 S100A2P29034 98 aa11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 ENHOQ6UWT2 76 aa11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 BAGE3Q86Y29 109 aa11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 KIR2DL4Q99706 377 aa11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 ALKBH7Q9BT30 221 aaPredicted RBP11.05□□□□□ -0.64
CCDC28A-202ENST00000611852 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 IGKV2-29A2NJV5 120 aaPredicted RBP11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 H7C423 109 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 C20orf203Q8NBC4 194 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 SMIM2Q9BVW6 85 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 IGLV4-60A0A075B6I1 120 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 PSCAO43653 123 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 FCER1GP30273 86 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 HIST3H2BBQ8N257 126 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 LINC00269Q8N2A0 174 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 C18orf32Q8TCD1 76 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 TM2D2Q9BX73 214 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 PRR34Q9NV39 138 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 LAMTOR2Q9Y2Q5 125 aa11.04□□□□□ -0.64
CCDC28A-202ENST00000611852 CRPP02741 224 aa11.03□□□□□ -0.64
CCDC28A-202ENST00000611852 HECTD4Q9Y4D8 3996 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms