RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 EGFEM1PQ0D2K5 195 aa10.97□□□□□ -0.65
VRK3-218ENST00000600031 C11orf72Q8NBR9 251 aa10.97□□□□□ -0.65
VRK3-218ENST00000600031 RPL39LQ96EH5 51 aaKnown RBP10.97□□□□□ -0.65
VRK3-218ENST00000600031 G3V4G9 280 aa10.96□□□□□ -0.65
VRK3-218ENST00000600031 RPL32P62910 135 aaKnown RBP10.96□□□□□ -0.65
VRK3-218ENST00000600031 C2orf66Q6UXQ4 117 aa10.96□□□□□ -0.65
VRK3-218ENST00000600031 JPT2Q9H910 190 aa10.96□□□□□ -0.65
VRK3-218ENST00000600031 NHP2Q9NX24 153 aaKnown RBP10.96□□□□□ -0.65
VRK3-218ENST00000600031 COTL1Q14019 142 aa10.96□□□□□ -0.66
VRK3-218ENST00000600031 OR11H2Q8NH07 326 aa10.96□□□□□ -0.66
VRK3-218ENST00000600031 ZNF415Q09FC8 603 aa10.95□□□□□ -0.66
VRK3-218ENST00000600031 DNAH3Q8TD57 4116 aa10.95□□□□□ -0.66
VRK3-218ENST00000600031 MYMXA0A1B0GTQ4 84 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 BAALCQ8WXS3 180 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 IGHV4-30-4P0DP06 118 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 ZNF876PQ49A33 203 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 SYT8Q8NBV8 401 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 HIST1H4GQ99525 98 aa10.94□□□□□ -0.66
VRK3-218ENST00000600031 E9PLD3 99 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 K7ERJ3 54 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 KIF25-AS1Q9Y6Z4 181 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 TRBV7-3A0A075B6L6 115 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 IGLL5B9A064 214 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 C12orf74Q32Q52 190 aa10.93□□□□□ -0.66
VRK3-218ENST00000600031 M0R2P5 195 aa10.92□□□□□ -0.66
VRK3-218ENST00000600031 A0A087WWL8 130 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 PRSS29PA6NIE9 313 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 LINC00315P59091 139 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 KIR2DL5BQ8NHK3 375 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 IL17DQ8TAD2 202 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 TMEM263Q8WUH6 116 aaKnown RBP10.91□□□□□ -0.66
VRK3-218ENST00000600031 CYSLTR1Q9Y271 337 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 PAPPA-AS1Q5QFB9 102 aa10.91□□□□□ -0.66
VRK3-218ENST00000600031 A0A1B0GWB2 263 aa10.9□□□□□ -0.66
VRK3-218ENST00000600031 APOC4P55056 127 aa10.9□□□□□ -0.66
VRK3-218ENST00000600031 ZNF479Q96JC4 524 aa10.9□□□□□ -0.66
VRK3-218ENST00000600031 SPXQ9BT56 116 aa10.9□□□□□ -0.66
VRK3-218ENST00000600031 PLAC8L1A1L4L8 177 aa10.9□□□□□ -0.67
VRK3-218ENST00000600031 CRYGDP07320 174 aa10.9□□□□□ -0.67
VRK3-218ENST00000600031 POLR2KP53803 58 aaKnown RBP10.9□□□□□ -0.67
VRK3-218ENST00000600031 RRN3P1Q2M238 152 aa10.9□□□□□ -0.67
VRK3-218ENST00000600031 PTH2Q96A98 100 aa10.9□□□□□ -0.67
VRK3-218ENST00000600031 MRPL16Q9NX20 251 aaKnown RBP10.9□□□□□ -0.67
VRK3-218ENST00000600031 VCYO14598 125 aa10.89□□□□□ -0.67
VRK3-218ENST00000600031 FAM74A4Q5TZK3 123 aa10.89□□□□□ -0.67
VRK3-218ENST00000600031 PRADC1Q9BSG0 188 aa10.89□□□□□ -0.67
VRK3-218ENST00000600031 NBEAL2Q6ZNJ1 2754 aa10.89□□□□□ -0.67
VRK3-218ENST00000600031 F8W1H4 67 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 DEFB135Q30KP9 77 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 C16orf74Q96GX8 76 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 TMEM141Q96I45 108 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 SUMO4Q6EEV6 95 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 ZFP2Q6ZN57 461 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 KIR2DL4Q99706 377 aa10.88□□□□□ -0.67
VRK3-218ENST00000600031 TRBV6-5A0A0K0K1A5 114 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 HERVK_113P61574 105 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 PIK3CD-AS1Q5SR53 167 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 NOP10Q9NPE3 64 aaKnown RBP10.87□□□□□ -0.67
VRK3-218ENST00000600031 X6R8D5 127 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 IGIPA6NJ69 53 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 TIMM17AQ99595 171 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 TP53TG1Q9Y2A0 90 aa10.87□□□□□ -0.67
VRK3-218ENST00000600031 NOTCH1P46531 2555 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 NACAE9PAV3 2078 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 TRGV1A0A0A0MS02 117 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 TMEM238LA0A1B0GVL6 79 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 A6NJY4 79 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 ZNF815PA8K554 130 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 DAZ2Q13117 558 aaKnown RBP10.86□□□□□ -0.67
VRK3-218ENST00000600031 PMVKQ15126 192 aa10.86□□□□□ -0.67
VRK3-218ENST00000600031 A8MWV9 139 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 A8MZ25 164 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 F5H697 171 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 RIPPLY3P57055 190 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 CFAP126Q5VTH2 177 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 Q6ZTI0 123 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 IGHV3-73A0A0B4J1V6 119 aa10.85□□□□□ -0.67
VRK3-218ENST00000600031 RPL24P83731 157 aaKnown RBP10.85□□□□□ -0.67
VRK3-218ENST00000600031 IGLV4-69A0A075B6H9 119 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 TRBV27A0A0K0K1C4 114 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 TSHBP01222 138 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 ZNF56Q15929 161 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 SCGB1D4Q6XE38 83 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 SDHAF1A6NFY7 115 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 PRB2P02812 416 aaPredicted RBP10.84□□□□□ -0.67
VRK3-218ENST00000600031 EMP1P54849 157 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 OVOL2Q9BRP0 275 aa10.84□□□□□ -0.67
VRK3-218ENST00000600031 SMIM9A6NGZ8 99 aa10.83□□□□□ -0.68
VRK3-218ENST00000600031 C11orf86A6NJI1 115 aa10.83□□□□□ -0.68
VRK3-218ENST00000600031 RS1O15537 224 aa10.83□□□□□ -0.68
VRK3-218ENST00000600031 MGAM2Q2M2H8 2515 aa10.83□□□□□ -0.68
VRK3-218ENST00000600031 NBEAL1Q6ZS30 2694 aa10.83□□□□□ -0.68
VRK3-218ENST00000600031 TEX48A0A1B0GUV7 120 aa10.82□□□□□ -0.68
VRK3-218ENST00000600031 RNF183Q96D59 192 aa10.82□□□□□ -0.68
VRK3-218ENST00000600031 SRSF9Q13242 221 aaKnown RBP eCLIP10.82□□□□□ -0.68
VRK3-218ENST00000600031 J3QR89 54 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 M0QY20 66 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 GAGE7O76087 117 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 GAGE12FP0CL80 117 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 GAGE12GP0CL81 117 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms