RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GAGE12JA6NER3 117 aa8.8□□□□□ -1
UPF1-208ENST00000600012 C5orf52A6NGY3 159 aa8.8□□□□□ -1
UPF1-208ENST00000600012 PMCHP20382 165 aa8.8□□□□□ -1
UPF1-208ENST00000600012 GAGE1Q13065 139 aa8.8□□□□□ -1
UPF1-208ENST00000600012 GAGE4Q13068 117 aa8.8□□□□□ -1
UPF1-208ENST00000600012 GAGE5Q13069 117 aa8.8□□□□□ -1
UPF1-208ENST00000600012 RHOHQ15669 191 aa8.8□□□□□ -1
UPF1-208ENST00000600012 GAGE13Q4V321 117 aa8.8□□□□□ -1
UPF1-208ENST00000600012 Q8N8P6 123 aa8.8□□□□□ -1
UPF1-208ENST00000600012 DEFB104AQ8WTQ1 72 aa8.8□□□□□ -1
UPF1-208ENST00000600012 TNFRSF18Q9Y5U5 241 aa8.8□□□□□ -1
UPF1-208ENST00000600012 DYNC1H1Q14204 4646 aaKnown RBP8.79□□□□□ -1
UPF1-208ENST00000600012 A0A0J9YY99 117 aa8.79□□□□□ -1
UPF1-208ENST00000600012 TRBV10-1A0A0K0K1A3 114 aa8.79□□□□□ -1
UPF1-208ENST00000600012 PRSS47A8MTI9 375 aa8.79□□□□□ -1
UPF1-208ENST00000600012 TCAPO15273 167 aa8.79□□□□□ -1
UPF1-208ENST00000600012 CRYBA4P53673 196 aa8.79□□□□□ -1
UPF1-208ENST00000600012 POLR2KP53803 58 aaKnown RBP8.79□□□□□ -1
UPF1-208ENST00000600012 C1orf134Q5TEV5 83 aa8.79□□□□□ -1
UPF1-208ENST00000600012 ZNRF2Q8NHG8 242 aa8.79□□□□□ -1
UPF1-208ENST00000600012 DNAJC30Q96LL9 226 aa8.79□□□□□ -1
UPF1-208ENST00000600012 NXT2Q9NPJ8 142 aaKnown RBP8.79□□□□□ -1
UPF1-208ENST00000600012 HHLA3Q9XRX5 114 aa8.79□□□□□ -1
UPF1-208ENST00000600012 IGHV3-38A0A0C4DH36 116 aa8.78□□□□□ -1
UPF1-208ENST00000600012 HSBP1O75506 76 aa8.78□□□□□ -1
UPF1-208ENST00000600012 LINC00614P0C842 121 aa8.78□□□□□ -1
UPF1-208ENST00000600012 RPL32P62910 135 aaKnown RBP8.78□□□□□ -1
UPF1-208ENST00000600012 RPL36AP83881 106 aaKnown RBP8.78□□□□□ -1
UPF1-208ENST00000600012 PMCHL1Q16048 86 aa8.78□□□□□ -1
UPF1-208ENST00000600012 HIST3H2BBQ8N257 126 aa8.78□□□□□ -1
UPF1-208ENST00000600012 C15orf53Q8NAA6 179 aa8.78□□□□□ -1
UPF1-208ENST00000600012 RPL36ALQ969Q0 106 aaKnown RBP8.78□□□□□ -1
UPF1-208ENST00000600012 CHCHD1Q96BP2 118 aaKnown RBP8.78□□□□□ -1
UPF1-208ENST00000600012 PRADC1Q9BSG0 188 aa8.78□□□□□ -1
UPF1-208ENST00000600012 PRO0255Q9UI72 69 aa8.78□□□□□ -1
UPF1-208ENST00000600012 TRBV7-3A0A075B6L6 115 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 PAX4O43316 350 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 ESDP10768 282 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 GYPEP15421 78 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 FAM19A2Q8N3H0 131 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 VSIG2Q96IQ7 327 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 AP5S1Q9NUS5 200 aa8.77□□□□□ -1.01
UPF1-208ENST00000600012 PKD1P98161 4303 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 TRAV26-1A0A087WT03 109 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 TRBV27A0A0K0K1C4 114 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 VCYO14598 125 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 LINC00694P0DN24 101 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 UBE2D3P61077 147 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 UBE2D2P62837 147 aa8.76□□□□□ -1.01
UPF1-208ENST00000600012 IGHV1-24A0A0C4DH33 117 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 LINC01546A6NGU7 62 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 IFITM10A6NMD0 228 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 I3L3M4 83 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 TSHBP01222 138 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 S100A2P29034 98 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 AMTP48728 403 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 LAGE3Q14657 143 aa8.75□□□□□ -1.01
UPF1-208ENST00000600012 A0A096LNJ9 63 aa8.74□□□□□ -1.01
UPF1-208ENST00000600012 FCER1GP30273 86 aa8.74□□□□□ -1.01
UPF1-208ENST00000600012 KIR2DL4Q99706 377 aa8.74□□□□□ -1.01
UPF1-208ENST00000600012 ABCA13Q86UQ4 5058 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 A0A096LPF7 62 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 FABP4P15090 132 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 ORMDL2Q53FV1 153 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 HIST1H2BLQ99880 126 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 KRTAP4-5Q9BYR2 181 aa8.73□□□□□ -1.01
UPF1-208ENST00000600012 C16orf90A8MZG2 172 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 NUDT3O95989 172 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 HBDP02042 147 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 BTF3P20290 206 aaKnown RBP8.72□□□□□ -1.01
UPF1-208ENST00000600012 COTL1Q14019 142 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 DAZ4Q86SG3 579 aaKnown RBP8.72□□□□□ -1.01
UPF1-208ENST00000600012 TMEM18Q96B42 140 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 DAZ3Q9NR90 486 aaKnown RBP8.72□□□□□ -1.01
UPF1-208ENST00000600012 ICOSQ9Y6W8 199 aa8.72□□□□□ -1.01
UPF1-208ENST00000600012 NBDYA0A0U1RRE5 68 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 LOC105371267A0A1B0GV96 52 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 K7EMI3 77 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 CDK2AP2O75956 126 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 TNP2Q05952 138 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 NTM-AS1Q6ZSK4 140 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 LINC00173Q6ZV60 143 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 C6orf223Q8N319 242 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 ATP6V0E2Q8NHE4 81 aa8.71□□□□□ -1.02
UPF1-208ENST00000600012 CCL18P55774 89 aa8.7□□□□□ -1.02
UPF1-208ENST00000600012 CHCHD7Q9BUK0 85 aa8.7□□□□□ -1.02
UPF1-208ENST00000600012 RPL39P62891 51 aaKnown RBP8.69□□□□□ -1.02
UPF1-208ENST00000600012 MRPL23Q16540 153 aaKnown RBP8.69□□□□□ -1.02
UPF1-208ENST00000600012 C2orf66Q6UXQ4 117 aa8.69□□□□□ -1.02
UPF1-208ENST00000600012 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.68□□□□□ -1.02
UPF1-208ENST00000600012 IGKV2-29A2NJV5 120 aaPredicted RBP8.68□□□□□ -1.02
UPF1-208ENST00000600012 H3BNG1 76 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 LEPROTL1O95214 131 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 C20orf203Q8NBC4 194 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 OR10D4PQ8NGN7 298 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 TOMM6Q96B49 74 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 PACRGQ96M98 296 aaPredicted RBP8.68□□□□□ -1.02
UPF1-208ENST00000600012 CYSLTR1Q9Y271 337 aa8.68□□□□□ -1.02
UPF1-208ENST00000600012 AKR1D1P51857 326 aa8.67□□□□□ -1.02
UPF1-208ENST00000600012 HSPG2P98160 4391 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms