RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TSHBP01222 138 aa10.66□□□□□ -0.7
TRIM28-209ENST00000597423 HBDP02042 147 aa10.66□□□□□ -0.7
TRIM28-209ENST00000597423 BTF3P20290 206 aaKnown RBP10.66□□□□□ -0.7
TRIM28-209ENST00000597423 LINC00310P59036 64 aa10.66□□□□□ -0.7
TRIM28-209ENST00000597423 PDZD11Q5EBL8 140 aa10.66□□□□□ -0.7
TRIM28-209ENST00000597423 HSPB8Q9UJY1 196 aa10.66□□□□□ -0.7
TRIM28-209ENST00000597423 IGHV1-24A0A0C4DH33 117 aa10.65□□□□□ -0.7
TRIM28-209ENST00000597423 IGHV3-38A0A0C4DH36 116 aa10.65□□□□□ -0.7
TRIM28-209ENST00000597423 LINC00694P0DN24 101 aa10.65□□□□□ -0.7
TRIM28-209ENST00000597423 FAM19A2Q8N3H0 131 aa10.65□□□□□ -0.7
TRIM28-209ENST00000597423 CYSLTR1Q9Y271 337 aa10.65□□□□□ -0.7
TRIM28-209ENST00000597423 LEPROTL1O95214 131 aa10.64□□□□□ -0.71
TRIM28-209ENST00000597423 C15orf53Q8NAA6 179 aa10.64□□□□□ -0.71
TRIM28-209ENST00000597423 MEGF8Q7Z7M0 2845 aa10.63□□□□□ -0.71
TRIM28-209ENST00000597423 TRBV25-1A0A075B6N4 114 aa10.63□□□□□ -0.71
TRIM28-209ENST00000597423 FABP4P15090 132 aa10.63□□□□□ -0.71
TRIM28-209ENST00000597423 PMCHL1Q16048 86 aa10.63□□□□□ -0.71
TRIM28-209ENST00000597423 HIST1H2BLQ99880 126 aa10.63□□□□□ -0.71
TRIM28-209ENST00000597423 A0A096LPF7 62 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 H7C423 109 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 ATP5LO75964 103 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 C2orf66Q6UXQ4 117 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 C20orf203Q8NBC4 194 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 TOMM6Q96B49 74 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 TMEM243Q9BU79 118 aa10.62□□□□□ -0.71
TRIM28-209ENST00000597423 TRBV6-8A0A0A6YYG3 113 aa10.61□□□□□ -0.71
TRIM28-209ENST00000597423 UBE2L6O14933 153 aa10.61□□□□□ -0.71
TRIM28-209ENST00000597423 TIRAPP58753 221 aa10.61□□□□□ -0.71
TRIM28-209ENST00000597423 DEFB104AQ8WTQ1 72 aa10.61□□□□□ -0.71
TRIM28-209ENST00000597423 SCGB3A1Q96QR1 104 aa10.61□□□□□ -0.71
TRIM28-209ENST00000597423 KLK5Q9Y337 293 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-209ENST00000597423 PKIAP61925 76 aa10.6□□□□□ -0.71
TRIM28-209ENST00000597423 TMEM141Q96I45 108 aa10.6□□□□□ -0.71
TRIM28-209ENST00000597423 MAP1LC3CQ9BXW4 147 aa10.6□□□□□ -0.71
TRIM28-209ENST00000597423 TENM3Q9P273 2699 aa10.6□□□□□ -0.71
TRIM28-209ENST00000597423 NUPR2A6NF83 97 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 IGLL5B9A064 214 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-209ENST00000597423 PAPPA-AS1Q5QFB9 102 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 CEMP1Q6PRD7 247 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-209ENST00000597423 NTM-AS1Q6ZSK4 140 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 ERASQ7Z444 233 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 CHCHD7Q9BUK0 85 aa10.59□□□□□ -0.71
TRIM28-209ENST00000597423 A0A096LNJ9 63 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 TRAV8-6A0A0B4J262 113 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 NPSP0C0P6 89 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 LELP1Q5T871 98 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 AMMECR1LQ6DCA0 310 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 DGAT2L7PQ6IED9 249 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 LYPD5Q6UWN5 251 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 IFI27L1Q96BM0 104 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 CHCHD5Q9BSY4 110 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 SPANXA1Q9NS26 97 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 PYGO1Q9Y3Y4 419 aa10.58□□□□□ -0.72
TRIM28-209ENST00000597423 HUWE1Q7Z6Z7 4374 aaKnown RBP10.57□□□□□ -0.72
TRIM28-209ENST00000597423 IFITM10A6NMD0 228 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 TCTAP57738 103 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 Q6ZN92 141 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 OR10D4PQ8NGN7 298 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 TMEM101Q96IK0 257 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 TIMM17AQ99595 171 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 TIMM21Q9BVV7 248 aa10.57□□□□□ -0.72
TRIM28-209ENST00000597423 PRSS1P07477 247 aa10.56□□□□□ -0.72
TRIM28-209ENST00000597423 DNAH9Q9NYC9 4486 aa10.56□□□□□ -0.72
TRIM28-209ENST00000597423 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-209ENST00000597423 IGKV2-29A2NJV5 120 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-209ENST00000597423 IGIPA6NJ69 53 aa10.55□□□□□ -0.72
TRIM28-209ENST00000597423 TMEM262E9PQX1 116 aa10.55□□□□□ -0.72
TRIM28-209ENST00000597423 ZNF25P17030 456 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-209ENST00000597423 AKR1D1P51857 326 aa10.55□□□□□ -0.72
TRIM28-209ENST00000597423 KRTDAPP60985 99 aa10.55□□□□□ -0.72
TRIM28-209ENST00000597423 RPL39P62891 51 aaKnown RBP10.55□□□□□ -0.72
TRIM28-209ENST00000597423 CSDC2Q9Y534 153 aaKnown RBP10.55□□□□□ -0.72
TRIM28-209ENST00000597423 LOC105371267A0A1B0GV96 52 aa10.54□□□□□ -0.72
TRIM28-209ENST00000597423 C20orf202A1L168 122 aa10.54□□□□□ -0.72
TRIM28-209ENST00000597423 FGF6P10767 208 aa10.54□□□□□ -0.72
TRIM28-209ENST00000597423 CCL18P55774 89 aa10.54□□□□□ -0.72
TRIM28-209ENST00000597423 MRPL52Q86TS9 123 aaKnown RBP10.54□□□□□ -0.72
TRIM28-209ENST00000597423 VCX2Q9H322 139 aa10.54□□□□□ -0.72
TRIM28-209ENST00000597423 GAGE6Q13070 117 aa10.53□□□□□ -0.72
TRIM28-209ENST00000597423 PET117Q6UWS5 81 aa10.53□□□□□ -0.72
TRIM28-209ENST00000597423 OR5A1Q8NGJ0 315 aa10.53□□□□□ -0.72
TRIM28-209ENST00000597423 UBE2D4Q9Y2X8 147 aa10.53□□□□□ -0.72
TRIM28-209ENST00000597423 SYS1-DBNDD2H3BUS1 97 aa10.52□□□□□ -0.73
TRIM28-209ENST00000597423 MRPS36P82909 103 aaKnown RBP10.52□□□□□ -0.73
TRIM28-209ENST00000597423 ESRGQ1W209 222 aa10.52□□□□□ -0.73
TRIM28-209ENST00000597423 SPATA12Q7Z6I5 190 aa10.52□□□□□ -0.73
TRIM28-209ENST00000597423 A0A087WX48 190 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 A0A1B0GUV1 79 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 C3orf79P0CE67 100 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 PMVKQ15126 192 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 LINC00173Q6ZV60 143 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 WWC2-AS2Q96NR7 200 aa10.51□□□□□ -0.73
TRIM28-209ENST00000597423 TRAV12-1A0A0B4J245 112 aa10.5□□□□□ -0.73
TRIM28-209ENST00000597423 SCGB1D1O95968 90 aa10.5□□□□□ -0.73
TRIM28-209ENST00000597423 TEX43Q6ZNM6 134 aa10.5□□□□□ -0.73
TRIM28-209ENST00000597423 C2orf88Q9BSF0 95 aa10.5□□□□□ -0.73
TRIM28-209ENST00000597423 COL7A1Q02388 2944 aa10.49□□□□□ -0.73
TRIM28-209ENST00000597423 IGLV4-3A0A075B6K6 122 aa10.49□□□□□ -0.73
TRIM28-209ENST00000597423 H0Y8G0 127 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 152.6 ms