RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 LHFPL1Q86WI0 220 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 GPHB5Q86YW7 130 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 C3orf56Q8N813 242 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 DAND5Q8N907 189 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 LINC00301Q8NCQ3 95 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 STAG3L4Q8TBR4 150 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 H1FXQ92522 213 aaKnown RBP1.68□□□□□ -2.14
VPS4B-203ENST00000588323 RNASE6Q93091 150 aaKnown RBP1.68□□□□□ -2.14
VPS4B-203ENST00000588323 LINC00526Q96FQ7 95 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 COX14Q96I36 57 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 YPEL2Q96QA6 119 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 CCL19Q99731 98 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 TM2D3Q9BRN9 247 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 UPK3BQ9BT76 320 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 AGPAT4-IT1Q9H0P7 198 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 C11orf1Q9H5F2 150 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 NPVFQ9HCQ7 196 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 EPDR1Q9UM22 224 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 HLA-DRB4X5D2U9 266 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 DSPPQ9NZW4 1301 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 NYNRINQ9P2P1 1898 aaKnown RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 PIGBOS1A0A0B4J2F0 54 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 TRBV7-6A0A0J9YX20 115 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 TRBV27A0A0K0K1C4 114 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF727A8MUV8 499 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF736B4DX44 427 aaPredicted RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 C9JCJ5 164 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 MCRIP1C9JLW8 97 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 H3BT86 120 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 K7EP34 96 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM256-PLSCR3K7ERE1 68 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 PLA2G10O15496 165 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 SYNGR2O43760 224 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF73O43830 326 aaPredicted RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BKO60814 126 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 PGLYRP1O75594 196 aaPredicted RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 IGKV1-17P01599 117 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 STATHP02808 62 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 PRM2P04554 102 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 SLC25A5P05141 298 aaKnown RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BJP06899 126 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 P0DMU3 169 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 FAM231AP0DMU4 169 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 FAM231CP0DMU5 169 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 ASIPP42127 132 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 NPC2P61916 151 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 QRFPP83859 136 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 CDK5R1Q15078 307 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 LGALS9BQ3B8N2 356 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 Q6ZUT4 128 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 C10orf111Q8N326 155 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 VSTM2AQ8TAG5 236 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BLQ99880 126 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 NPCDR1Q9BY65 106 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 OSTCQ9NRP0 149 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 CACFD1Q9UGQ2 172 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 RABAC1Q9UI14 185 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 KLK5Q9Y337 293 aaPredicted RBP1.67□□□□□ -2.14
VPS4B-203ENST00000588323 FAM215AQ9Y5M1 114 aa1.67□□□□□ -2.14
VPS4B-203ENST00000588323 CADP27708 2225 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 A0A096LNT2 108 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 MUC21A0A0G2JKD1 596 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF860A6NHJ4 632 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 M0R378 163 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 YPEL1O60688 119 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 LY6HO94772 140 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 PROSCO94903 275 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 NDUFB6O95139 128 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 NDUFB2O95178 105 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 HBDP02042 147 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 MT-ATP8P03928 68 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 CD3DP04234 171 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 NMBP08949 121 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 CCL3P10147 92 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 COX6A1P12074 109 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF80P51504 273 aaPredicted RBP1.66□□□□□ -2.14
VPS4B-203ENST00000588323 DYNLT3P51808 116 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 PCBD1P61457 104 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SNRPD3P62318 126 aaKnown RBP1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SEC11AP67812 179 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 MRPS36P82909 103 aaKnown RBP1.66□□□□□ -2.14
VPS4B-203ENST00000588323 CIRBPQ14011 172 aaKnown RBP1.66□□□□□ -2.14
VPS4B-203ENST00000588323 DIAPH2-AS1Q14236 149 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 LGALS9CQ6DKI2 356 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 NOXRED1Q6NXP6 359 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM91Q6ZNR0 172 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 TEN1Q86WV5 123 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 DEFB106AQ8N104 65 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 RPP25LQ8N5L8 163 aaKnown RBP1.66□□□□□ -2.14
VPS4B-203ENST00000588323 LINC00311Q8N616 119 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SIGLECL1Q8N7X8 197 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 Q8NAQ8 132 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 C1orf64Q8NEQ6 169 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 OTOSQ8NHW6 89 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 MUC7Q8TAX7 377 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 FAM213BQ8TBF2 198 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 DCANP1Q8TF63 244 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SMDT1Q9H4I9 107 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 ST20Q9HBF5 79 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SERP1Q9Y6X1 66 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms