RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 IGLV4-60A0A075B6I1 120 aa18.38■□□□□ 0.53
LIG3-208ENST00000586407 AMTP48728 403 aa18.38■□□□□ 0.53
LIG3-208ENST00000586407 SRSF3P84103 164 aaKnown RBP18.38■□□□□ 0.53
LIG3-208ENST00000586407 COTL1Q14019 142 aa18.38■□□□□ 0.53
LIG3-208ENST00000586407 FRZBQ92765 325 aa18.38■□□□□ 0.53
LIG3-208ENST00000586407 IGLV10-54A0A075B6I4 117 aa18.37■□□□□ 0.53
LIG3-208ENST00000586407 HIGD1CA8MV81 97 aa18.37■□□□□ 0.53
LIG3-208ENST00000586407 TSKUQ8WUA8 353 aa18.37■□□□□ 0.53
LIG3-208ENST00000586407 OSTCQ9NRP0 149 aa18.37■□□□□ 0.53
LIG3-208ENST00000586407 FAT1Q14517 4588 aa18.36■□□□□ 0.53
LIG3-208ENST00000586407 USP17L23D6RBM5 183 aa18.36■□□□□ 0.53
LIG3-208ENST00000586407 GAS8-AS1O95177 125 aa18.36■□□□□ 0.53
LIG3-208ENST00000586407 KRTAP26-1Q6PEX3 210 aa18.36■□□□□ 0.53
LIG3-208ENST00000586407 DNAH8Q96JB1 4490 aa18.36■□□□□ 0.53
LIG3-208ENST00000586407 REG3AQ06141 175 aa18.35■□□□□ 0.53
LIG3-208ENST00000586407 TEX261Q6UWH6 196 aa18.35■□□□□ 0.53
LIG3-208ENST00000586407 V9GYV3 84 aa18.35■□□□□ 0.53
LIG3-208ENST00000586407 BORCS7Q96B45 105 aa18.34■□□□□ 0.53
LIG3-208ENST00000586407 RPL23P62829 140 aaKnown RBP18.33■□□□□ 0.52
LIG3-208ENST00000586407 Q6ZSA8 131 aa18.33■□□□□ 0.52
LIG3-208ENST00000586407 ISOC2Q96AB3 205 aa18.33■□□□□ 0.52
LIG3-208ENST00000586407 A0A1B0GUT8 65 aa18.32■□□□□ 0.52
LIG3-208ENST00000586407 UBE2L6O14933 153 aa18.32■□□□□ 0.52
LIG3-208ENST00000586407 TMEM241Q24JQ0 296 aa18.32■□□□□ 0.52
LIG3-208ENST00000586407 ADIRFQ15847 76 aa18.31■□□□□ 0.52
LIG3-208ENST00000586407 A0A1B0GUV1 79 aa18.3■□□□□ 0.52
LIG3-208ENST00000586407 SDHAF1A6NFY7 115 aa18.3■□□□□ 0.52
LIG3-208ENST00000586407 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.29■□□□□ 0.52
LIG3-208ENST00000586407 IGKV2-29A2NJV5 120 aaPredicted RBP18.29■□□□□ 0.52
LIG3-208ENST00000586407 PRSS1P07477 247 aa18.29■□□□□ 0.52
LIG3-208ENST00000586407 INAFM2P0DMQ5 153 aa18.29■□□□□ 0.52
LIG3-208ENST00000586407 C14orf177Q52M58 125 aa18.29■□□□□ 0.52
LIG3-208ENST00000586407 RNF185Q96GF1 192 aa18.29■□□□□ 0.52
LIG3-208ENST00000586407 FAM74A3Q4VXF1 159 aa18.28■□□□□ 0.52
LIG3-208ENST00000586407 AMN1Q8IY45 258 aa18.27■□□□□ 0.52
LIG3-208ENST00000586407 NUP35Q8NFH5 326 aa18.27■□□□□ 0.52
LIG3-208ENST00000586407 TMEM191AQ9H0A3 160 aa18.27■□□□□ 0.52
LIG3-208ENST00000586407 RPS10P46783 165 aaKnown RBP18.26■□□□□ 0.51
LIG3-208ENST00000586407 PEA15Q15121 130 aa18.26■□□□□ 0.51
LIG3-208ENST00000586407 NAT8Q9UHE5 227 aa18.26■□□□□ 0.51
LIG3-208ENST00000586407 IGKV3OR2-268A0A0C4DH90 116 aa18.25■□□□□ 0.51
LIG3-208ENST00000586407 FAM231BA6NCW3 169 aa18.25■□□□□ 0.51
LIG3-208ENST00000586407 FAM229AH3BQW9 127 aa18.25■□□□□ 0.51
LIG3-208ENST00000586407 APCSP02743 223 aa18.25■□□□□ 0.51
LIG3-208ENST00000586407 SCXQ7RTU7 201 aa18.25■□□□□ 0.51
LIG3-208ENST00000586407 SMKR1H3BMG3 65 aa18.24■□□□□ 0.51
LIG3-208ENST00000586407 NCR2O95944 276 aa18.24■□□□□ 0.51
LIG3-208ENST00000586407 RAB4AP20338 218 aa18.24■□□□□ 0.51
LIG3-208ENST00000586407 VPS13BQ7Z7G8 4022 aa18.23■□□□□ 0.51
LIG3-208ENST00000586407 TRBV6-5A0A0K0K1A5 114 aa18.23■□□□□ 0.51
LIG3-208ENST00000586407 PMCHP20382 165 aa18.23■□□□□ 0.51
LIG3-208ENST00000586407 TMEM242Q9NWH2 141 aa18.23■□□□□ 0.51
LIG3-208ENST00000586407 RIGQ13278 110 aa18.22■□□□□ 0.51
LIG3-208ENST00000586407 AMMECR1LQ6DCA0 310 aa18.22■□□□□ 0.51
LIG3-208ENST00000586407 RNASEKQ6P5S7 137 aaKnown RBP18.22■□□□□ 0.51
LIG3-208ENST00000586407 ST20Q9HBF5 79 aa18.22■□□□□ 0.51
LIG3-208ENST00000586407 FLG2Q5D862 2391 aaPredicted RBP18.22■□□□□ 0.51
LIG3-208ENST00000586407 TRAV8-4A0A0B4J246 113 aa18.21■□□□□ 0.51
LIG3-208ENST00000586407 I3L3M4 83 aa18.21■□□□□ 0.51
LIG3-208ENST00000586407 TSHBP01222 138 aa18.21■□□□□ 0.51
LIG3-208ENST00000586407 FGF6P10767 208 aa18.2■□□□□ 0.5
LIG3-208ENST00000586407 NAT8BQ9UHF3 227 aa18.2■□□□□ 0.5
LIG3-208ENST00000586407 LINC00528Q8N1L1 170 aa18.19■□□□□ 0.5
LIG3-208ENST00000586407 MRAP2Q96G30 205 aa18.18■□□□□ 0.5
LIG3-208ENST00000586407 GAGE12HA6NDE8 117 aa18.17■□□□□ 0.5
LIG3-208ENST00000586407 CHAC1Q9BUX1 264 aa18.17■□□□□ 0.5
LIG3-208ENST00000586407 SMIM27A0A1W2PRY6 76 aa18.16■□□□□ 0.5
LIG3-208ENST00000586407 POLR2KP53803 58 aaKnown RBP18.16■□□□□ 0.5
LIG3-208ENST00000586407 CIRBP-AS1Q8TBR5 109 aa18.16■□□□□ 0.5
LIG3-208ENST00000586407 SRRM2Q9UQ35 2752 aaKnown RBP18.15■□□□□ 0.5
LIG3-208ENST00000586407 hDV102S1A0JD36 115 aa18.15■□□□□ 0.5
LIG3-208ENST00000586407 CAMPP49913 170 aa18.15■□□□□ 0.5
LIG3-208ENST00000586407 SMDT1Q9H4I9 107 aa18.15■□□□□ 0.5
LIG3-208ENST00000586407 H7C423 109 aa18.14■□□□□ 0.49
LIG3-208ENST00000586407 ESDP10768 282 aa18.14■□□□□ 0.49
LIG3-208ENST00000586407 NRACQ8N912 160 aa18.14■□□□□ 0.49
LIG3-208ENST00000586407 DGAT2L7PQ6IED9 249 aa18.13■□□□□ 0.49
LIG3-208ENST00000586407 C9orf163Q8N9P6 203 aa18.13■□□□□ 0.49
LIG3-208ENST00000586407 MRPL51Q4U2R6 128 aaKnown RBP18.12■□□□□ 0.49
LIG3-208ENST00000586407 CHCHD10Q8WYQ3 142 aaPredicted RBP18.12■□□□□ 0.49
LIG3-208ENST00000586407 TRBV27A0A0K0K1C4 114 aa18.11■□□□□ 0.49
LIG3-208ENST00000586407 FAM104BQ5XKR9 115 aa18.11■□□□□ 0.49
LIG3-208ENST00000586407 MRPL54Q6P161 138 aaKnown RBP18.11■□□□□ 0.49
LIG3-208ENST00000586407 CLRN3Q8NCR9 226 aa18.11■□□□□ 0.49
LIG3-208ENST00000586407 SLPIP03973 132 aa18.1■□□□□ 0.49
LIG3-208ENST00000586407 C15orf56Q8N910 161 aa18.1■□□□□ 0.49
LIG3-208ENST00000586407 PANO1I0J062 215 aa18.09■□□□□ 0.49
LIG3-208ENST00000586407 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP18.09■□□□□ 0.49
LIG3-208ENST00000586407 ZNF25P17030 456 aaPredicted RBP18.08■□□□□ 0.48
LIG3-208ENST00000586407 SUMO2P61956 95 aaKnown RBP18.08■□□□□ 0.48
LIG3-208ENST00000586407 OR5A1Q8NGJ0 315 aa18.08■□□□□ 0.48
LIG3-208ENST00000586407 TMEM101Q96IK0 257 aa18.08■□□□□ 0.48
LIG3-208ENST00000586407 BTF3L4Q96K17 158 aa18.08■□□□□ 0.48
LIG3-208ENST00000586407 PLA2G1BP04054 148 aaKnown RBP18.07■□□□□ 0.48
LIG3-208ENST00000586407 HIGD2BQ4VC39 106 aa18.07■□□□□ 0.48
LIG3-208ENST00000586407 C7orf77A4D0Y5 90 aa18.06■□□□□ 0.48
LIG3-208ENST00000586407 FCER1GP30273 86 aa18.06■□□□□ 0.48
LIG3-208ENST00000586407 CNBPP62633 177 aaKnown RBP18.06■□□□□ 0.48
LIG3-208ENST00000586407 SDIM1Q6ZPB5 146 aa18.06■□□□□ 0.48
LIG3-208ENST00000586407 VCYO14598 125 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms