RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GAGE12FP0CL80 117 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 GAGE12GP0CL81 117 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 GAGE12IP0CL82 117 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 EMP1P54849 157 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 Q6ZTI0 123 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 IFI27L1Q96BM0 104 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 CYSLTR1Q9Y271 337 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 AGRNO00468 2067 aa7.22□□□□□ -1.25
SS18-207ENST00000577636 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.21□□□□□ -1.26
SS18-207ENST00000577636 PRSS1P07477 247 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 POLR2KP53803 58 aaKnown RBP7.21□□□□□ -1.26
SS18-207ENST00000577636 PKIAP61925 76 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 RHOHQ15669 191 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 UFSP1Q6NVU6 142 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 Q6ZN92 141 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 SPATA12Q7Z6I5 190 aa7.21□□□□□ -1.26
SS18-207ENST00000577636 A0A096LNJ9 63 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 TRGV4A0A0C4DH28 118 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 TRBV10-1A0A0K0K1A3 114 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 LYRM9A8MSI8 78 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 MIFP14174 115 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 RPL36AP83881 106 aaKnown RBP7.2□□□□□ -1.26
SS18-207ENST00000577636 C2orf66Q6UXQ4 117 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 TEX43Q6ZNM6 134 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 OR11H2Q8NH07 326 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 RPL36ALQ969Q0 106 aaKnown RBP7.2□□□□□ -1.26
SS18-207ENST00000577636 C18orf15Q96N68 181 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 SCGB3A1Q96QR1 104 aa7.2□□□□□ -1.26
SS18-207ENST00000577636 KIAA1109Q2LD37 5005 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 TEX48A0A1B0GUV7 120 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 K7EQD1 137 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 LINC00173Q6ZV60 143 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 NEGR1Q7Z3B1 354 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 TOMM6Q96B49 74 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 ZNF479Q96JC4 524 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 X6R8D5 127 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 RYR1P21817 5038 aa7.19□□□□□ -1.26
SS18-207ENST00000577636 PLAC8L1A1L4L8 177 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 DEFB130BP0DP73 79 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 DEFB130AP0DP74 79 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 COTL1Q14019 142 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 LINC01545Q5VT33 79 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 LINC00336Q6ZUF6 198 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 ERASQ7Z444 233 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 TMEM141Q96I45 108 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 PRADC1Q9BSG0 188 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 APLNQ9ULZ1 77 aa7.18□□□□□ -1.26
SS18-207ENST00000577636 TRAV9-2A0A087WT02 112 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 TRBV6-4A0A1B0GX49 114 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 M0R2N4 97 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 SMAGPQ0VAQ4 97 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 SPATA45Q537H7 98 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 PAPPA-AS1Q5QFB9 102 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 CDPF1Q6NVV7 123 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 Q8N976 141 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 NEXN-AS1Q8NBZ9 246 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 PAM16Q9Y3D7 125 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 MUC4Q99102 2169 aa7.17□□□□□ -1.26
SS18-207ENST00000577636 VPS13DQ5THJ4 4388 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 TRBV7-3A0A075B6L6 115 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 IGHV4-28A0A0C4DH34 117 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 PRSS29PA6NIE9 313 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 TSHBP01222 138 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 SPART-AS1P0CW21 52 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 P0DMU3 169 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 FAM231AP0DMU4 169 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 FAM231CP0DMU5 169 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 TCTAP57738 103 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 Q6ZSN1 163 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 DAZ4Q86SG3 579 aaKnown RBP7.16□□□□□ -1.26
SS18-207ENST00000577636 ATOH7Q8N100 152 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 ZNRF2Q8NHG8 242 aa7.16□□□□□ -1.26
SS18-207ENST00000577636 DAZ3Q9NR90 486 aaKnown RBP7.16□□□□□ -1.26
SS18-207ENST00000577636 TRAV12-1A0A0B4J245 112 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 PLNP26678 52 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 DAD1P61803 113 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 FAM222AQ5U5X8 452 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 ZNF664Q8N3J9 261 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 SLC25A29Q8N8R3 303 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 TIMM17AQ99595 171 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 PRO1933Q9H354 126 aa7.15□□□□□ -1.26
SS18-207ENST00000577636 C11orf68Q9H3H3 251 aaKnown RBP7.15□□□□□ -1.26
SS18-207ENST00000577636 A0A1B0GVY2 172 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 GAGE12JA6NER3 117 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 DPM2O94777 84 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 GAGE1Q13065 139 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 GAGE4Q13068 117 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 GAGE5Q13069 117 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 GAGE13Q4V321 117 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 TMEM97Q5BJF2 176 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 LINC00612Q8N6U2 182 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 C20orf203Q8NBC4 194 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 PMCHL2Q9BQD1 86 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 KRTAP4-5Q9BYR2 181 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 HHLA3Q9XRX5 114 aa7.14□□□□□ -1.27
SS18-207ENST00000577636 A0A087WX48 190 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 IGKCP01834 107 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 NPSP0C0P6 89 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 DDTP30046 118 aa7.13□□□□□ -1.27
SS18-207ENST00000577636 FHL2Q14192 279 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms