RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 OPRPNQ99935 248 aaPredicted RBP7.35□□□□□ -1.23
VPS53-220ENST00000576149 IGLL5B9A064 214 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 FHL3Q13643 280 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 TMEM170BQ5T4T1 132 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 SCGB1D4Q6XE38 83 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 C11orf72Q8NBR9 251 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 LINC01587Q99440 93 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 ESM1Q9NQ30 184 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 APCP25054 2843 aa7.34□□□□□ -1.23
VPS53-220ENST00000576149 SMIM9A6NGZ8 99 aa7.34□□□□□ -1.23
VPS53-220ENST00000576149 K7ERU9 68 aa7.34□□□□□ -1.23
VPS53-220ENST00000576149 C6orf226Q5I0X4 101 aa7.34□□□□□ -1.23
VPS53-220ENST00000576149 PPDPFQ9H3Y8 114 aa7.34□□□□□ -1.23
VPS53-220ENST00000576149 NBPF19A0A087WUL8 3843 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 INSP01308 110 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 CFAP126Q5VTH2 177 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 IGLV4-3A0A075B6K6 122 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 TSPEAR-AS2P59090 65 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 ODF3L2Q3SX64 289 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 HIST2H2BCQ6DN03 193 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 C11orf44Q8N8P7 122 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 EPG5Q9HCE0 2579 aa7.33□□□□□ -1.24
VPS53-220ENST00000576149 A0A0J9YY99 117 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 CCL24O00175 119 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 CD28P10747 220 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 BEAN1Q3B7T3 259 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 Q6ZSN1 163 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 PYGO1Q9Y3Y4 419 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 SRSF9Q13242 221 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS53-220ENST00000576149 KIR2DL5BQ8NHK3 375 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 Q9UF83 564 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 AKAP9Q99996 3911 aa7.32□□□□□ -1.24
VPS53-220ENST00000576149 TMEM223A0PJW6 202 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 J3QQQ9 107 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 RHODO00212 210 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 KRTAP1-1Q07627 177 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 RRN3P1Q2M238 152 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 STHQ8IWL8 128 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 AMELXQ99217 191 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 MYO9AB2RTY4 2548 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 ZNF22P17026 224 aaPredicted RBP7.31□□□□□ -1.24
VPS53-220ENST00000576149 FAM104AQ969W3 186 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 MRPL16Q9NX20 251 aaKnown RBP7.31□□□□□ -1.24
VPS53-220ENST00000576149 XCL2Q9UBD3 114 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 ITPR3Q14573 2671 aa7.31□□□□□ -1.24
VPS53-220ENST00000576149 IGHV3-53P01767 116 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 MALP21145 153 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 SPANXB1Q9NS25 103 aaPredicted RBP7.3□□□□□ -1.24
VPS53-220ENST00000576149 A0A0J9YXV3 536 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 LEPROTO15243 131 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 LGALS3P17931 250 aaKnown RBP7.3□□□□□ -1.24
VPS53-220ENST00000576149 AZU1P20160 251 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 UBE2D1P51668 147 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 C1orf158Q8N1D5 194 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 SLC25A29Q8N8R3 303 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 DNAJC30Q96LL9 226 aa7.3□□□□□ -1.24
VPS53-220ENST00000576149 LINC01006Q8NI28 216 aa7.29□□□□□ -1.24
VPS53-220ENST00000576149 CHCHD7Q9BUK0 85 aa7.29□□□□□ -1.24
VPS53-220ENST00000576149 C16orf95Q9H693 158 aa7.29□□□□□ -1.24
VPS53-220ENST00000576149 NACAE9PAV3 2078 aa7.29□□□□□ -1.24
VPS53-220ENST00000576149 TLN2Q9Y4G6 2542 aa7.29□□□□□ -1.24
VPS53-220ENST00000576149 RNASE1P07998 156 aaKnown RBP7.29□□□□□ -1.24
VPS53-220ENST00000576149 IGHV3-30P01768 117 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 IGHV3-30-5P0DP03 117 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 MRPS36P82909 103 aaKnown RBP7.28□□□□□ -1.24
VPS53-220ENST00000576149 CEMP1Q6PRD7 247 aaPredicted RBP7.28□□□□□ -1.24
VPS53-220ENST00000576149 IL17DQ8TAD2 202 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 SPANXA1Q9NS26 97 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 UBE2D4Q9Y2X8 147 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 V9GYY9 64 aa7.28□□□□□ -1.24
VPS53-220ENST00000576149 SONP18583 2426 aaKnown RBP7.27□□□□□ -1.25
VPS53-220ENST00000576149 CUBNO60494 3623 aa7.27□□□□□ -1.25
VPS53-220ENST00000576149 IGHV3OR16-12A0A075B7B8 117 aa7.27□□□□□ -1.25
VPS53-220ENST00000576149 IGHV3-64A0A075B6Q5 118 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.26□□□□□ -1.25
VPS53-220ENST00000576149 IGKV2-29A2NJV5 120 aaPredicted RBP7.26□□□□□ -1.25
VPS53-220ENST00000576149 F8W1H4 67 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 G3V4G9 280 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 H3BMG7 143 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 IGHV3-38A0A0C4DH36 116 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 PLA2G2AP14555 144 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 NDUFA11Q86Y39 141 aa7.26□□□□□ -1.25
VPS53-220ENST00000576149 TRGV1A0A0A0MS02 117 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 TINCRA0A1B0GVN0 87 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 APOMO95445 188 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 CMC4P56277 68 aaPredicted RBP7.25□□□□□ -1.25
VPS53-220ENST00000576149 RNASE13Q5GAN3 156 aaKnown RBP7.25□□□□□ -1.25
VPS53-220ENST00000576149 ANK3Q12955 4377 aaKnown RBP7.25□□□□□ -1.25
VPS53-220ENST00000576149 FLNAP21333 2647 aaKnown RBP7.25□□□□□ -1.25
VPS53-220ENST00000576149 CFC1BP0CG36 223 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 CFC1P0CG37 223 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 IGHV3-30-3P0DP02 117 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 GAGE5Q13069 117 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 GAGE6Q13070 117 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 TMEM263Q8WUH6 116 aaKnown RBP7.25□□□□□ -1.25
VPS53-220ENST00000576149 TIMM21Q9BVV7 248 aa7.25□□□□□ -1.25
VPS53-220ENST00000576149 J3QKU1 62 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 WFDC2Q14508 124 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 Q6ZUT4 128 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 C10orf126Q8N4M7 172 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms