RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 YPEL3P61236 119 aaPredicted RBP4.91□□□□□ -1.62
VPS53-217ENST00000575100 TWIST1Q15672 202 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 LYRM7Q5U5X0 104 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 Q6ZUT4 128 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 DHRS4-AS1Q9P1J3 65 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 IGHV3-49A0A0A0MS15 119 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 IGHV3-74A0A0B4J1X5 117 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 UMAD1C9J7I0 102 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 K7EP34 96 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 PAX4O43316 350 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 DPM2O94777 84 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 IGLV2-8P01709 118 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 HERVK_113P63121 156 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 LINC00305Q7Z4B0 112 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 ZC2HC1AQ96GY0 325 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 FAM167A-AS1Q96KT0 104 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 SCRT1Q9BWW7 348 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 FUT9Q9Y231 359 aa4.91□□□□□ -1.62
VPS53-217ENST00000575100 DNAH3Q8TD57 4116 aa4.9□□□□□ -1.62
VPS53-217ENST00000575100 IGHV3-66A0A0C4DH42 116 aa4.9□□□□□ -1.63
VPS53-217ENST00000575100 HSPB1P04792 205 aaKnown RBP4.9□□□□□ -1.63
VPS53-217ENST00000575100 CRYBB3P26998 211 aa4.9□□□□□ -1.63
VPS53-217ENST00000575100 LINC01547P58512 204 aaPredicted RBP4.9□□□□□ -1.63
VPS53-217ENST00000575100 C10orf113Q5VZT2 155 aa4.9□□□□□ -1.63
VPS53-217ENST00000575100 KLHL30-AS1Q8NEE0 82 aa4.9□□□□□ -1.63
VPS53-217ENST00000575100 TMEM190Q8WZ59 177 aa4.9□□□□□ -1.63
VPS53-217ENST00000575100 FAM236AA0A1B0GUQ0 79 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 FAM236BA0A1B0GV22 79 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 HYPMO75409 117 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 MT-ATP8P03928 68 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 ARL14EPLP0DKL9 152 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 PYYP10082 97 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 HERVK_113P61574 105 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 C4orf3Q8WVX3 66 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 CTXND1A0A1B0GTU2 59 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 H3BRN7 92 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 LGALS9O00182 355 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 ZNF253O75346 499 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 IGLC2P0DOY2 106 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 IGLC3P0DOY3 106 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 PRB4P10163 310 aaPredicted RBP4.89□□□□□ -1.63
VPS53-217ENST00000575100 BCL2P10415 239 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 ATP5G3P48201 142 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 C2orf66Q6UXQ4 117 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 CHCHD5Q9BSY4 110 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 PAXXQ9BUH6 204 aa4.89□□□□□ -1.63
VPS53-217ENST00000575100 TRAV4A0A0B4J268 109 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 NDUFA4O00483 81 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 APOMO95445 188 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 CXCL6P80162 114 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 MRPL54Q6P161 138 aaKnown RBP4.88□□□□□ -1.63
VPS53-217ENST00000575100 DPPA3Q6W0C5 159 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 NUP35Q8NFH5 326 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 SHANK2-AS3Q9BTD1 123 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 KRTAP17-1Q9BYP8 105 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 SMAD5-AS1Q9Y6J3 95 aa4.88□□□□□ -1.63
VPS53-217ENST00000575100 IGLV8-61A0A075B6I0 122 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 TRAV1-1A0A0B4J248 108 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 C9JQL5 133 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 PRB2P02812 416 aaPredicted RBP4.87□□□□□ -1.63
VPS53-217ENST00000575100 LINC00313P59037 77 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 ORMDL2Q53FV1 153 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 GPHB5Q86YW7 130 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 IGF2BP2-AS1Q96M15 143 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 TMEM191AQ9H0A3 160 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 RABAC1Q9UI14 185 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 KMT2CQ8NEZ4 4911 aaKnown RBP4.87□□□□□ -1.63
VPS53-217ENST00000575100 M0R381 172 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 TRGC2P03986 189 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 SFTA3P0C7M3 94 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 GCHFRP30047 84 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 IMMP2LQ96T52 175 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 GNG13Q9P2W3 67 aa4.87□□□□□ -1.63
VPS53-217ENST00000575100 NCR2O95944 276 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 SCGB1C2P0DMR2 95 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 NPPCP23582 126 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 FOXA3P55318 350 aaPredicted RBP4.86□□□□□ -1.63
VPS53-217ENST00000575100 NDUFA11Q86Y39 141 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 ATOH7Q8N100 152 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 DPH3Q96FX2 82 aa4.86□□□□□ -1.63
VPS53-217ENST00000575100 ZNF706Q9Y5V0 76 aaPredicted RBP4.86□□□□□ -1.63
VPS53-217ENST00000575100 TRBV19A0A075B6N1 114 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 A0A087X002 238 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 IGHV7-4-1A0A0J9YVY3 117 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 UBE2L3P68036 154 aaKnown RBP4.85□□□□□ -1.63
VPS53-217ENST00000575100 Q8NBF4 154 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 TIMM17AQ99595 171 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 RHPN1-AS1Q9BWJ2 59 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 SPANXDQ9BXN6 97 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 NOTCH3Q9UM47 2321 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 RYR3Q15413 4870 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 IGKV3-7A0A075B6H7 116 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 A0A087WWC5 75 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 MUC21A0A0G2JKD1 596 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 C2orf70A6NJV1 201 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 NDUFC2-KCTD14E9PQ53 114 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 CBLN1P23435 193 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 NMUP48645 174 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 Q0VG73 95 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 CEMP1Q6PRD7 247 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms