RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 RBMY1CP0DJD4 496 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 RBMY1FQ15415 496 aaKnown RBP6.47□□□□□ -1.37
LINC00558-201ENST00000569422 SAMD5Q5TGI4 173 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 TMEM61Q8N0U2 210 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 SYT8Q8NBV8 401 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 PRADC1Q9BSG0 188 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 ITPR3Q14573 2671 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 C2CD3Q4AC94 2353 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 A0A1B0GX51 115 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 VCYO14598 125 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 MED14OSP0DP75 135 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 CEND1Q8N111 149 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 WFDC11Q8NEX6 87 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 DYNLRB2Q8TF09 96 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 PKIGQ9Y2B9 76 aa6.47□□□□□ -1.37
LINC00558-201ENST00000569422 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.37
LINC00558-201ENST00000569422 JMJD1CQ15652 2540 aa6.46□□□□□ -1.37
LINC00558-201ENST00000569422 ZNF815PA8K554 130 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 TSHBP01222 138 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 DLX4Q92988 240 aaPredicted RBP6.46□□□□□ -1.38
LINC00558-201ENST00000569422 A0A1W2PPM0 123 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 C11orf86A6NJI1 115 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 C9JAW5 83 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 PPP1R17O96001 155 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 FABP2P12104 132 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 ZNF580Q9UK33 172 aa6.46□□□□□ -1.38
LINC00558-201ENST00000569422 MYMXA0A1B0GTQ4 84 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 POLR2KP53803 58 aaKnown RBP6.45□□□□□ -1.38
LINC00558-201ENST00000569422 TRAV12-1A0A0B4J245 112 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 LINC01619G3V211 115 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 LINC00694P0DN24 101 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 RPS28P62857 69 aaKnown RBP6.45□□□□□ -1.38
LINC00558-201ENST00000569422 SRSF9Q13242 221 aaKnown RBP eCLIP6.45□□□□□ -1.38
LINC00558-201ENST00000569422 RNASE13Q5GAN3 156 aaKnown RBP6.45□□□□□ -1.38
LINC00558-201ENST00000569422 PLEKHB2Q96CS7 222 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 Q9UF83 564 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 NACAE9PAV3 2078 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 C1orf195Q5TG92 126 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 MORN3Q6PF18 240 aaPredicted RBP6.45□□□□□ -1.38
LINC00558-201ENST00000569422 C9orf85Q96MD7 179 aa6.45□□□□□ -1.38
LINC00558-201ENST00000569422 J3QR89 54 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 M0QY20 66 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 NXPH4O95158 308 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 AMTNQ6UX39 209 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 LINC01587Q99440 93 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 HIGD1BQ9P298 99 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 K7EP34 96 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 SPINK8P0C7L1 97 aa6.44□□□□□ -1.38
LINC00558-201ENST00000569422 RPL24P83731 157 aaKnown RBP6.44□□□□□ -1.38
LINC00558-201ENST00000569422 CEMP1Q6PRD7 247 aaPredicted RBP6.44□□□□□ -1.38
LINC00558-201ENST00000569422 LGALS9O00182 355 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 SPANXB1Q9NS25 103 aaPredicted RBP6.43□□□□□ -1.38
LINC00558-201ENST00000569422 XCL2Q9UBD3 114 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 IGHV3-38A0A0C4DH36 116 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 TEX48A0A1B0GUV7 120 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 RBMY1BA6NDE4 496 aaKnown RBP6.43□□□□□ -1.38
LINC00558-201ENST00000569422 RBMY1EA6NEQ0 496 aaKnown RBP6.43□□□□□ -1.38
LINC00558-201ENST00000569422 IGIPA6NJ69 53 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 RBMY1DP0C7P1 496 aaKnown RBP6.43□□□□□ -1.38
LINC00558-201ENST00000569422 PMVKQ15126 192 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 AKAP9Q99996 3911 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 H3BMM0 161 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 APOMO95445 188 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 FSHBP01225 129 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 C12orf74Q32Q52 190 aa6.43□□□□□ -1.38
LINC00558-201ENST00000569422 IGLV4-69A0A075B6H9 119 aa6.42□□□□□ -1.38
LINC00558-201ENST00000569422 TRGV11A0A075B6L2 103 aa6.42□□□□□ -1.38
LINC00558-201ENST00000569422 PHLDA1Q8WV24 401 aaPredicted RBP6.42□□□□□ -1.38
LINC00558-201ENST00000569422 E9PLD3 99 aa6.42□□□□□ -1.38
LINC00558-201ENST00000569422 TRPT1Q86TN4 253 aaKnown RBP6.42□□□□□ -1.38
LINC00558-201ENST00000569422 TM2D2Q9BX73 214 aa6.42□□□□□ -1.38
LINC00558-201ENST00000569422 TRBV27A0A0K0K1C4 114 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 Q6ZSV7 163 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 IGLL5B9A064 214 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 H3BMG7 143 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 POM121L12Q8N7R1 296 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 MAP6D1Q9H9H5 199 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 H3BS24 57 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 NDUFA7O95182 113 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 TSPEAR-AS2P59090 65 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 HERVK_113P61574 105 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 Q6ZSN1 163 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 ODF3Q96PU9 254 aa6.41□□□□□ -1.38
LINC00558-201ENST00000569422 TENM4Q6N022 2769 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 CR1P17927 2039 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 A0A0J9YXV3 536 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 ADARB2-AS1A8MUL3 147 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 I3L3M4 83 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 CD28P10747 220 aa6.4□□□□□ -1.38
LINC00558-201ENST00000569422 ITPR2Q14571 2701 aa6.4□□□□□ -1.39
LINC00558-201ENST00000569422 TRBV7-3A0A075B6L6 115 aa6.4□□□□□ -1.39
LINC00558-201ENST00000569422 DNAJC9-AS1A6NH13 148 aa6.4□□□□□ -1.39
LINC00558-201ENST00000569422 IGHV3-53P01767 116 aa6.4□□□□□ -1.39
LINC00558-201ENST00000569422 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.39□□□□□ -1.39
LINC00558-201ENST00000569422 LOC107984156A0A0G2JMH3 177 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 FAM236DA0A1B0GTK5 79 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 IGKV2-29A2NJV5 120 aaPredicted RBP6.39□□□□□ -1.39
LINC00558-201ENST00000569422 CRLF1O75462 422 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 FAM236CP0DP71 79 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 DEFB114Q30KQ6 69 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms