RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 hADV29S1A0JD25 119 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 HCG22E2RYF7 251 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 JMJD7-PLA2G4BH0Y9G9 81 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 GNGT2O14610 69 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 NUPR1O60356 82 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 IGLV3-1P01715 115 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 IGHV3-30P01768 117 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 CCKP06307 115 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 IGHV3-30-5P0DP03 117 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 PDE6GP18545 87 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 UBE2D1P51668 147 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 CCL8P80075 99 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 MPV17LQ2QL34 196 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 COA5Q86WW8 74 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 NDUFA11Q86Y39 141 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 FAM213BQ8TBF2 198 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 LCN9Q8WX39 176 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 PMCHL2Q9BQD1 86 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 CDC42SE1Q9NRR8 79 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 MRPL36Q9P0J6 103 aaKnown RBP0.54□□□□□ -2.32
VPS35-207ENST00000568191 LINC00474Q9P2X8 69 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 KLK9Q9UKQ9 250 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 SUPT6HQ7KZ85 1726 aaKnown RBP0.54□□□□□ -2.32
VPS35-207ENST00000568191 UBR1Q8IWV7 1749 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 CNTRLQ7Z7A1 2325 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 F8P00451 2351 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 CEP162Q5TB80 1403 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 FAM208BQ5VWN6 2430 aa0.54□□□□□ -2.32
VPS35-207ENST00000568191 ADGRB2O60241 1585 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 LRRC37A3O60309 1634 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 MYO3AQ8NEV4 1616 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 SIPA1L3O60292 1781 aaPredicted RBP0.53□□□□□ -2.32
VPS35-207ENST00000568191 MAP2P11137 1827 aaKnown RBP0.53□□□□□ -2.32
VPS35-207ENST00000568191 LAMA4Q16363 1823 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 TRAV23DV6A0A075B6W5 121 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 TRBV7-7A0A0K0K1E9 115 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 NAP1L6A6NFF2 107 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 CRYM-AS1A6NIL9 109 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 H3BQF6 201 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 HCRTO43612 131 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 SIX6O95475 246 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 DNAL4O96015 105 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 GYPAP02724 150 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 IL9P15248 144 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 ASIPP42127 132 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 KRTDAPP60985 99 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 RPL37AP61513 92 aaKnown RBP0.53□□□□□ -2.32
VPS35-207ENST00000568191 GNG11P61952 73 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 SEC11AP67812 179 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 ZNF818PQ6ZRF7 136 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 CYP2G1PQ6ZSU1 146 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 C15orf53Q8NAA6 179 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 MYOZ3Q8TDC0 251 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 TSLPQ969D9 159 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 AMELYQ99218 206 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 CYP4F30PQ9H0H9 118 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 NPVFQ9HCQ7 196 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 TMEM14CQ9P0S9 112 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 UACAQ9BZF9 1416 aa0.53□□□□□ -2.32
VPS35-207ENST00000568191 RRBP1Q9P2E9 1410 aaKnown RBP0.53□□□□□ -2.32
VPS35-207ENST00000568191 KDM5DQ9BY66 1539 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 ARHGEF5Q12774 1597 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 DNMBPQ6XZF7 1577 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 DIP2BQ9P265 1576 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 DIP2CQ9Y2E4 1556 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 SPTBN2O15020 2390 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 CACNA1HO95180 2353 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 KIF14Q15058 1648 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 MAP3K4Q9Y6R4 1608 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 MYOM1P52179 1685 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 SCN7AQ01118 1682 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 COL4A6Q14031 1691 aa0.53□□□□□ -2.33
VPS35-207ENST00000568191 PEAK1Q9H792 1746 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 ANKRD36A6QL64 1941 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 CNOT1A5YKK6 2376 aaKnown RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 C2CD3Q4AC94 2353 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 GVINP1Q7Z2Y8 2422 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 TRBV7-3A0A075B6L6 115 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 IGLV3-32A0A0A0MS00 114 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 NBDYA0A0U1RRE5 68 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 TEX49A0A1B0GTD5 131 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 LOC101927531A0A1B0GV80 90 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 CLPSL1A2RUU4 121 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 HIGD1CA8MV81 97 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 K7EP34 96 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 M0R2N4 97 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 ATOX1O00244 68 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 INE1O15225 51 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 SFT2D2O95562 160 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 UBE2D3P61077 147 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 UBE2D2P62837 147 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 PRB3Q04118 309 aaPredicted RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 SPATA45Q537H7 98 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 C10orf128Q5T292 105 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 LINC00322Q6ZN03 302 aaPredicted RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 DEFB132Q7Z7B7 95 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 MGST2Q99735 147 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 C20orf78Q9BR46 151 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 WFDC10AQ9H1F0 79 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 BET1LQ9NYM9 111 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms