RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
CLK3-218ENST00000566926 TNFRSF18Q9Y5U5 241 aa9.3□□□□□ -0.92
CLK3-218ENST00000566926 TRBV27A0A0K0K1C4 114 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 LOC389332A0A1B0GUA5 103 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 LINC01549A6NIU2 74 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 K7EQD1 137 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 GATA1P15976 413 aaPredicted RBP9.29□□□□□ -0.92
CLK3-218ENST00000566926 IFI27P40305 119 aaPredicted RBP9.29□□□□□ -0.92
CLK3-218ENST00000566926 RHOHQ15669 191 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 ESRGQ1W209 222 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 RPL39LQ96EH5 51 aaKnown RBP9.29□□□□□ -0.92
CLK3-218ENST00000566926 KIR2DL4Q99706 377 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 PRADC1Q9BSG0 188 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 UPK3BQ9BT76 320 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 TMEM70Q9BUB7 260 aa9.29□□□□□ -0.92
CLK3-218ENST00000566926 MRPS16Q9Y3D3 137 aaKnown RBP9.29□□□□□ -0.92
CLK3-218ENST00000566926 IGHV3-73A0A0B4J1V6 119 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 SDHAF1A6NFY7 115 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 GAS8-AS1O95177 125 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 POLR2KP53803 58 aaKnown RBP9.28□□□□□ -0.92
CLK3-218ENST00000566926 LINC00310P59036 64 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 RPL36AP83881 106 aaKnown RBP9.28□□□□□ -0.92
CLK3-218ENST00000566926 ORMDL2Q53FV1 153 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 RPL36ALQ969Q0 106 aaKnown RBP9.28□□□□□ -0.92
CLK3-218ENST00000566926 Q9H8V8 135 aa9.28□□□□□ -0.92
CLK3-218ENST00000566926 TRBV7-3A0A075B6L6 115 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 NBDYA0A0U1RRE5 68 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 I3L3M4 83 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 AMTP48728 403 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 LAGE3Q14657 143 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 TTC32Q5I0X7 151 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 C1orf134Q5TEV5 83 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 NEGR1Q7Z3B1 354 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 SH2D6Q7Z4S9 175 aa9.27□□□□□ -0.93
CLK3-218ENST00000566926 DAZ4Q86SG3 579 aaKnown RBP9.26□□□□□ -0.93
CLK3-218ENST00000566926 SLC25A29Q8N8R3 303 aa9.26□□□□□ -0.93
CLK3-218ENST00000566926 URB1-AS1Q96HZ7 61 aa9.26□□□□□ -0.93
CLK3-218ENST00000566926 HIST1H2BLQ99880 126 aa9.26□□□□□ -0.93
CLK3-218ENST00000566926 DAZ3Q9NR90 486 aaKnown RBP9.26□□□□□ -0.93
CLK3-218ENST00000566926 HBDP02042 147 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 GYPEP15421 78 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 PDZD11Q5EBL8 140 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 Q6ZSN1 163 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 NEXN-AS1Q8NBZ9 246 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 HSPB8Q9UJY1 196 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 FRAS1Q86XX4 4008 aa9.25□□□□□ -0.93
CLK3-218ENST00000566926 EPPK1P58107 5090 aaKnown RBP9.24□□□□□ -0.93
CLK3-218ENST00000566926 IGHV1-24A0A0C4DH33 117 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 LOC105371267A0A1B0GV96 52 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 PRSS29PA6NIE9 313 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 RTL8CO15255 209 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 NUPR1O60356 82 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 FABP4P15090 132 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 FCER1GP30273 86 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 DNAH10Q8IVF4 4471 aa9.24□□□□□ -0.93
CLK3-218ENST00000566926 SIVA1O15304 175 aa9.23□□□□□ -0.93
CLK3-218ENST00000566926 BTF3P20290 206 aaKnown RBP9.23□□□□□ -0.93
CLK3-218ENST00000566926 TMEM97Q5BJF2 176 aa9.23□□□□□ -0.93
CLK3-218ENST00000566926 LYPD5Q6UWN5 251 aa9.23□□□□□ -0.93
CLK3-218ENST00000566926 C6orf223Q8N319 242 aa9.23□□□□□ -0.93
CLK3-218ENST00000566926 IFITM10A6NMD0 228 aa9.22□□□□□ -0.93
CLK3-218ENST00000566926 LEPROTL1O95214 131 aa9.22□□□□□ -0.93
CLK3-218ENST00000566926 UBE2D3P61077 147 aa9.22□□□□□ -0.93
CLK3-218ENST00000566926 UBE2D2P62837 147 aa9.22□□□□□ -0.93
CLK3-218ENST00000566926 COTL1Q14019 142 aa9.21□□□□□ -0.94
CLK3-218ENST00000566926 FAM19A2Q8N3H0 131 aa9.21□□□□□ -0.94
CLK3-218ENST00000566926 ATP5LO75964 103 aa9.2□□□□□ -0.94
CLK3-218ENST00000566926 LINC00694P0DN24 101 aa9.2□□□□□ -0.94
CLK3-218ENST00000566926 SMAGPQ0VAQ4 97 aa9.2□□□□□ -0.94
CLK3-218ENST00000566926 GTSF1LQ9H1H1 148 aa9.2□□□□□ -0.94
CLK3-218ENST00000566926 CYSLTR1Q9Y271 337 aa9.2□□□□□ -0.94
CLK3-218ENST00000566926 TRAV9-2A0A087WT02 112 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 GAGE12JA6NER3 117 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 K7EP13 123 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 TSHBP01222 138 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 AKR1D1P51857 326 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 TIRAPP58753 221 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 GAGE1Q13065 139 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 GAGE4Q13068 117 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 GAGE5Q13069 117 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 GAGE13Q4V321 117 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 OR10D4PQ8NGN7 298 aa9.19□□□□□ -0.94
CLK3-218ENST00000566926 A0A096LNJ9 63 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 LOC100131303A0A0U1RQF7 123 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 NPSP0C0P6 89 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 PMCHL1Q16048 86 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 TOMM6Q96B49 74 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 MAP1LC3CQ9BXW4 147 aa9.18□□□□□ -0.94
CLK3-218ENST00000566926 C2orf66Q6UXQ4 117 aa9.17□□□□□ -0.94
CLK3-218ENST00000566926 C20orf203Q8NBC4 194 aa9.17□□□□□ -0.94
CLK3-218ENST00000566926 TRAV8-6A0A0B4J262 113 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 A0A1B0GVY2 172 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 C20orf202A1L168 122 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 H7C423 109 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 SMIM6P0DI80 62 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 PAPPA-AS1Q5QFB9 102 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 ERASQ7Z444 233 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 SPATA12Q7Z6I5 190 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 ATP6V0E2Q8NHE4 81 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 TMEM141Q96I45 108 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms