RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 C1orf137Q5JT78 98 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 AMMECR1LQ6DCA0 310 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 FER1L6-AS1Q8NA97 138 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 DIRC1Q969H9 104 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 CCDC32Q9BV29 185 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 SSBP4Q9BWG4 385 aaPredicted RBP4.46□□□□□ -1.7
VPS4A-203ENST00000564399 CRCT1Q9UGL9 99 aa4.46□□□□□ -1.7
VPS4A-203ENST00000564399 CTXND1A0A1B0GTU2 59 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 INMT-MINDY4F8WBC2 141 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 PTTG1IPP53801 180 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 CST9LP1Q5W188 147 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 SUMO4Q6EEV6 95 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 RNASEKQ6P5S7 137 aaKnown RBP4.45□□□□□ -1.7
VPS4A-203ENST00000564399 RASL11AQ6T310 242 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 STOML3Q8TAV4 291 aa4.45□□□□□ -1.7
VPS4A-203ENST00000564399 IGHV1-58A0A0C4DH39 117 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 LOC107984640A0A0U1RRK4 108 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 A0A1W2PNN7 141 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 SCO2A0A1W2PP80 73 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 ZNF561-AS1K7EIQ3 104 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 XCL1P47992 114 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 SYCNQ0VAF6 134 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 FOXI1Q12951 378 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 ZNF726P1Q15940 193 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 PGLYRP4Q96LB8 373 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 TPPP3Q9BW30 176 aa4.44□□□□□ -1.7
VPS4A-203ENST00000564399 IGLV1-50A0A075B6I6 118 aa4.43□□□□□ -1.7
VPS4A-203ENST00000564399 TRAV1-1A0A0B4J248 108 aa4.43□□□□□ -1.7
VPS4A-203ENST00000564399 UBE2D1P51668 147 aa4.43□□□□□ -1.7
VPS4A-203ENST00000564399 EIF5AP63241 154 aaKnown RBP4.43□□□□□ -1.7
VPS4A-203ENST00000564399 C9orf116Q5BN46 136 aaPredicted RBP4.43□□□□□ -1.7
VPS4A-203ENST00000564399 BAGE2Q86Y30 109 aa4.43□□□□□ -1.7
VPS4A-203ENST00000564399 NIT2Q9NQR4 276 aa4.43□□□□□ -1.7
VPS4A-203ENST00000564399 MAP1LC3B2A6NCE7 125 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 H0Y9J4 135 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 CCL25O15444 150 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 IGLV7-43P04211 117 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 S100A9P06702 114 aaKnown RBP4.42□□□□□ -1.7
VPS4A-203ENST00000564399 BCL2P10415 239 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 AKR1C8PQ5T2L2 129 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 PHF5AQ7RTV0 110 aaKnown RBP4.42□□□□□ -1.7
VPS4A-203ENST00000564399 ISOC2Q96AB3 205 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 TCEAL7Q9BRU2 100 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 MAP1LC3BQ9GZQ8 125 aa4.42□□□□□ -1.7
VPS4A-203ENST00000564399 MRPL18Q9H0U6 180 aaKnown RBP4.42□□□□□ -1.7
VPS4A-203ENST00000564399 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.41□□□□□ -1.7
VPS4A-203ENST00000564399 A0A087WZ39 114 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 BORCS7-ASMTA0A0B4J1R7 106 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 LOC100996750A0A140TA64 210 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 IGKV2-29A2NJV5 120 aaPredicted RBP4.41□□□□□ -1.7
VPS4A-203ENST00000564399 FGF6P10767 208 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 FHITP49789 147 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 CAMPP49913 170 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 RPL7L1Q6DKI1 246 aaKnown RBP4.41□□□□□ -1.7
VPS4A-203ENST00000564399 OR5A1Q8NGJ0 315 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 BTF3L4Q96K17 158 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
VPS4A-203ENST00000564399 LINC00959A0A1B0GUT2 108 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 PAGE4O60829 102 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 TSPAN13O95857 204 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 APCSP02743 223 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 H2AFB1P0C5Y9 115 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 TRGC1P0CF51 173 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 NTF3P20783 257 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 RPL13AP40429 203 aaKnown RBP4.4□□□□□ -1.71
VPS4A-203ENST00000564399 DEFA1P59665 94 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 RPL18AQ02543 176 aaKnown RBP4.4□□□□□ -1.71
VPS4A-203ENST00000564399 SS18Q15532 418 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 OR2D3Q8NGH3 330 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 TMEM101Q96IK0 257 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 CAMK2N2Q96S95 79 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 MLST8Q9BVC4 326 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 MED28Q9H204 178 aa4.4□□□□□ -1.71
VPS4A-203ENST00000564399 IGLV4-69A0A075B6H9 119 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 H7C423 109 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 APOMO95445 188 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 KRTAP1-4P0C5Y4 121 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 IGLC6P0CF74 106 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 MALP21145 153 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 RPS20P60866 119 aaKnown RBP4.39□□□□□ -1.71
VPS4A-203ENST00000564399 Q6ZNX1 250 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 MARVELD1Q9BSK0 173 aa4.39□□□□□ -1.71
VPS4A-203ENST00000564399 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.38□□□□□ -1.71
VPS4A-203ENST00000564399 PFDN1O60925 122 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 UPK1BO75841 260 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 NCR2O95944 276 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 ZNF25P17030 456 aaPredicted RBP4.38□□□□□ -1.71
VPS4A-203ENST00000564399 MEF2BQ02080 365 aaPredicted RBP4.38□□□□□ -1.71
VPS4A-203ENST00000564399 EIF5AL1Q6IS14 154 aaKnown RBP4.38□□□□□ -1.71
VPS4A-203ENST00000564399 CD164L2Q6UWJ8 174 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 NUP35Q8NFH5 326 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 TSKUQ8WUA8 353 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 S100ZQ8WXG8 99 aa4.38□□□□□ -1.71
VPS4A-203ENST00000564399 OPRPNQ99935 248 aaPredicted RBP4.38□□□□□ -1.71
VPS4A-203ENST00000564399 A0A1B0GV50 99 aa4.37□□□□□ -1.71
VPS4A-203ENST00000564399 XKRY2A2RUG3 117 aa4.37□□□□□ -1.71
VPS4A-203ENST00000564399 F2Z2F3 143 aa4.37□□□□□ -1.71
VPS4A-203ENST00000564399 LYZL1Q6UWQ5 148 aa4.37□□□□□ -1.71
VPS4A-203ENST00000564399 TMUB2Q71RG4 321 aa4.37□□□□□ -1.71
VPS4A-203ENST00000564399 GATD1Q8NB37 220 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms