RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MTORP42345 2549 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE12JA6NER3 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE7O76087 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE12FP0CL80 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE12GP0CL81 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE12IP0CL82 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 PSMB2P49721 201 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 GAGE4Q13068 117 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 HIST2H2BCQ6DN03 193 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 TMEM61Q8N0U2 210 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 A0A096LNT2 108 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 TRBV27A0A0K0K1C4 114 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 RBMY1BA6NDE4 496 aaKnown RBP9.91□□□□□ -0.82
CLK3-215ENST00000564353 RBMY1EA6NEQ0 496 aaKnown RBP9.91□□□□□ -0.82
CLK3-215ENST00000564353 LGALS9O00182 355 aa9.91□□□□□ -0.82
CLK3-215ENST00000564353 RBMY1DP0C7P1 496 aaKnown RBP9.91□□□□□ -0.82
CLK3-215ENST00000564353 A0A0J9YY99 117 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 A8MZ25 164 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 Q6ZSN1 163 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 POM121L12Q8N7R1 296 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 PTH2Q96A98 100 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 ZFAND6Q6FIF0 208 aa9.9□□□□□ -0.82
CLK3-215ENST00000564353 IGHV4-31P0DP07 118 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 HERVK_113P61574 105 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 NPC2P61916 151 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 TAL2Q16559 108 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 GAGE13Q4V321 117 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 C5orf47Q569G3 176 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 TEX29Q8N6K0 151 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 J3QQQ9 107 aa9.89□□□□□ -0.83
CLK3-215ENST00000564353 TRAV2A0A0B4J234 112 aa9.88□□□□□ -0.83
CLK3-215ENST00000564353 LGALS3P17931 250 aaKnown RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 CSDC2Q9Y534 153 aaKnown RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 ITPR3Q14573 2671 aa9.88□□□□□ -0.83
CLK3-215ENST00000564353 TRAV8-3A0A0A6YYJ7 113 aa9.88□□□□□ -0.83
CLK3-215ENST00000564353 Q6YL49 198 aa9.88□□□□□ -0.83
CLK3-215ENST00000564353 DLX4Q92988 240 aaPredicted RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 FLNAP21333 2647 aaKnown RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 IGKV2-29A2NJV5 120 aaPredicted RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 TRPT1Q86TN4 253 aaKnown RBP9.88□□□□□ -0.83
CLK3-215ENST00000564353 Q96MF0 132 aa9.88□□□□□ -0.83
CLK3-215ENST00000564353 CD28P10747 220 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 FOXI1Q12951 378 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 UBE2E2Q96LR5 201 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 TRAV25A0A0B4J276 109 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 TMEM141Q96I45 108 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 LINC01587Q99440 93 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 TIMM17AQ99595 171 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 XCL2Q9UBD3 114 aa9.87□□□□□ -0.83
CLK3-215ENST00000564353 I3L3M4 83 aa9.86□□□□□ -0.83
CLK3-215ENST00000564353 C20orf203Q8NBC4 194 aa9.86□□□□□ -0.83
CLK3-215ENST00000564353 IGLV4-3A0A075B6K6 122 aa9.86□□□□□ -0.83
CLK3-215ENST00000564353 DSCR9P59020 149 aa9.86□□□□□ -0.83
CLK3-215ENST00000564353 H3BMM0 161 aa9.85□□□□□ -0.83
CLK3-215ENST00000564353 CFC1BP0CG36 223 aa9.85□□□□□ -0.83
CLK3-215ENST00000564353 CFC1P0CG37 223 aa9.85□□□□□ -0.83
CLK3-215ENST00000564353 ELANEP08246 267 aa9.85□□□□□ -0.83
CLK3-215ENST00000564353 DYNLRB2Q8TF09 96 aa9.85□□□□□ -0.83
CLK3-215ENST00000564353 TRBV6-5A0A0K0K1A5 114 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 IGHV3-53P01767 116 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 IGHV3-30P01768 117 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 SCGB1C2P0DMR2 95 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 IGHV3-30-5P0DP03 117 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 ZNF22P17026 224 aaPredicted RBP9.84□□□□□ -0.83
CLK3-215ENST00000564353 NDUFA11Q86Y39 141 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 AMELXQ99217 191 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 PRO0461Q9UI25 63 aa9.84□□□□□ -0.83
CLK3-215ENST00000564353 TRGV11A0A075B6L2 103 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 SMCPP49901 116 aaPredicted RBP9.83□□□□□ -0.84
CLK3-215ENST00000564353 UBE2D1P51668 147 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 NFE4Q86UQ8 179 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 RHODO00212 210 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 PRSS2P07478 247 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 LINC01619G3V211 115 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 NDUFV3P56181 108 aaKnown RBP9.83□□□□□ -0.84
CLK3-215ENST00000564353 Q6ZSV7 163 aa9.83□□□□□ -0.84
CLK3-215ENST00000564353 SETXQ7Z333 2677 aaKnown RBP9.82□□□□□ -0.84
CLK3-215ENST00000564353 TMEM223A0PJW6 202 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 EIF4EBP3O60516 100 aaPredicted RBP9.82□□□□□ -0.84
CLK3-215ENST00000564353 TCL1BO95988 128 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 NSUN5P1Q3KNT7 163 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 MUSTN1Q8IVN3 82 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 C10orf126Q8N4M7 172 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 SLC25A29Q8N8R3 303 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 ODF3Q96PU9 254 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 MAP6D1Q9H9H5 199 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 MEIG1Q5JSS6 88 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 PAPPA-AS1Q5QFB9 102 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 DAND5Q8N907 189 aa9.82□□□□□ -0.84
CLK3-215ENST00000564353 CR1P17927 2039 aa9.81□□□□□ -0.84
CLK3-215ENST00000564353 A0A0U1RRA0 63 aa9.81□□□□□ -0.84
CLK3-215ENST00000564353 MRPL23Q16540 153 aaKnown RBP9.81□□□□□ -0.84
CLK3-215ENST00000564353 FAM104AQ969W3 186 aa9.81□□□□□ -0.84
CLK3-215ENST00000564353 ITPR2Q14571 2701 aa9.81□□□□□ -0.84
CLK3-215ENST00000564353 J3QLI3 93 aa9.81□□□□□ -0.84
CLK3-215ENST00000564353 LOC107984640A0A0U1RRK4 108 aa9.8□□□□□ -0.84
CLK3-215ENST00000564353 Q1RN00 199 aa9.8□□□□□ -0.84
CLK3-215ENST00000564353 HELZ2Q9BYK8 2649 aaKnown RBP9.8□□□□□ -0.84
CLK3-215ENST00000564353 NDUFA7O95182 113 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms