RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 SCGB2B2Q4G0G5 96 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 OR5H6Q8NGV6 325 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 PHYHIPLQ96FC7 376 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 DIRAS2Q96HU8 199 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 SLIRPQ9GZT3 109 aaKnown RBP2.73□□□□□ -1.97
VPS35-204ENST00000563884 MED28Q9H204 178 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 TREM1Q9NP99 234 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 CCDC59Q9P031 241 aaKnown RBP2.73□□□□□ -1.97
VPS35-204ENST00000563884 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 SMIM31A0A1B0GVY4 71 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 H3BP45 60 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 RRAS2P62070 204 aaPredicted RBP2.72□□□□□ -1.97
VPS35-204ENST00000563884 FAM74A1Q5RGS3 127 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 IZUMO2Q6UXV1 221 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 C20orf203Q8NBC4 194 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 CMTM2Q8TAZ6 248 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 LINC00526Q96FQ7 95 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 PGLYRP4Q96LB8 373 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 DERL1Q9BUN8 251 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 OR5AC2Q9NZP5 309 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 TPRKBQ9Y3C4 175 aa2.72□□□□□ -1.97
VPS35-204ENST00000563884 TRBV6-1A0A0K0K1D8 114 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 F6UZH7 168 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 M0QXV9 152 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 NBEAP1P0C6P0 100 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 PYYP10082 97 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 BCL2P10415 239 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 RNASE3P12724 160 aaKnown RBP2.71□□□□□ -1.98
VPS35-204ENST00000563884 CAMLGP49069 296 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 RAB4BP61018 213 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 IAH1Q2TAA2 248 aaPredicted RBP2.71□□□□□ -1.98
VPS35-204ENST00000563884 FAM19A5Q7Z5A7 132 aaPredicted RBP2.71□□□□□ -1.98
VPS35-204ENST00000563884 CHCHD10Q8WYQ3 142 aaPredicted RBP2.71□□□□□ -1.98
VPS35-204ENST00000563884 TMEM243Q9BU79 118 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 GGACTQ9BVM4 153 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 NMES1Q9C002 83 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 IL36BQ9NZH7 164 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 EXTL2Q9UBQ6 330 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 PSG8Q9UQ74 426 aa2.71□□□□□ -1.98
VPS35-204ENST00000563884 C19orf71A6NCJ1 209 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 ZNF56Q15929 161 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 KRTAP13-2Q52LG2 175 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 PCOTHQ58A44 107 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 C9orf129Q5T035 196 aaKnown RBP2.7□□□□□ -1.98
VPS35-204ENST00000563884 PET117Q6UWS5 81 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 LYZL2Q7Z4W2 148 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 PACRGLQ8N7B6 248 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 SFRP2Q96HF1 295 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 SCGB3A2Q96PL1 93 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 CAMK2N2Q96S95 79 aa2.7□□□□□ -1.98
VPS35-204ENST00000563884 TXNL4BQ9NX01 149 aaKnown RBP2.7□□□□□ -1.98
VPS35-204ENST00000563884 IGLV4-60A0A075B6I1 120 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 IGKV3OR2-268A0A0C4DH90 116 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 SDC2P34741 201 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 CXCL6P80162 114 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 NTM-AS1Q6ZSK4 140 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 CLVS1Q8IUQ0 354 aaPredicted RBP2.69□□□□□ -1.98
VPS35-204ENST00000563884 NUP35Q8NFH5 326 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 IMMP2LQ96T52 175 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 MGST2Q99735 147 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 BCL7BQ9BQE9 202 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 RTBDNQ9BSG5 229 aaPredicted RBP2.69□□□□□ -1.98
VPS35-204ENST00000563884 PSENENQ9NZ42 101 aa2.69□□□□□ -1.98
VPS35-204ENST00000563884 SERTM2A0A1B0GWG4 89 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 DISC1C4P0D8 188 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 H3BMQ9 156 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.68□□□□□ -1.98
VPS35-204ENST00000563884 H3BVH4 76 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 K7EQM0 130 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 RAB3DO95716 219 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 GCGP01275 180 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 CD3DP04234 171 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 GNAO1P09471 354 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 ESDP10768 282 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 TPT1P13693 172 aaKnown RBP2.68□□□□□ -1.98
VPS35-204ENST00000563884 GNGT1P63211 74 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 MEF2BQ02080 365 aaPredicted RBP2.68□□□□□ -1.98
VPS35-204ENST00000563884 SMUG1Q53HV7 270 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 PRNTQ86SH4 94 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 SNX29P2Q8IUI4 249 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 ZFP82Q8N141 532 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 OR2D3Q8NGH3 330 aa2.68□□□□□ -1.98
VPS35-204ENST00000563884 MRPS26Q9BYN8 205 aaKnown RBP2.68□□□□□ -1.98
VPS35-204ENST00000563884 METTL15P1P0C7V9 234 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 RPL29P47914 159 aaKnown RBP2.67□□□□□ -1.98
VPS35-204ENST00000563884 RANP62826 216 aaKnown RBP2.67□□□□□ -1.98
VPS35-204ENST00000563884 IL18Q14116 193 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 MIC13Q5XKP0 118 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 AMMECR1LQ6DCA0 310 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 TMEM14EPQ6UXP3 125 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 SMIM8Q96KF7 97 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 SDHCQ99643 169 aaPredicted RBP2.67□□□□□ -1.98
VPS35-204ENST00000563884 PRRT1Q99946 306 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 SLC25A21Q9BQT8 299 aaPredicted RBP2.67□□□□□ -1.98
VPS35-204ENST00000563884 SLC25A2Q9BXI2 301 aa2.67□□□□□ -1.98
VPS35-204ENST00000563884 F8WDY8 70 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 M0R381 172 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 SSSCA1O60232 199 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 OR7C2O60412 319 aa2.66□□□□□ -1.98
VPS35-204ENST00000563884 ATP5HO75947 161 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms