RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-208ENST00000563410 PDE6DO43924 150 aa13.35□□□□□ -0.27
CHD9-208ENST00000563410 SULT1A2P50226 295 aa13.35□□□□□ -0.27
CHD9-208ENST00000563410 C9orf62Q8N4C0 152 aa13.35□□□□□ -0.27
CHD9-208ENST00000563410 MED9Q9NWA0 146 aa13.35□□□□□ -0.27
CHD9-208ENST00000563410 TEX46H3BTG2 121 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 CTRLP40313 264 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 WDR73Q6P4I2 378 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 NUDT10Q8NFP7 164 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 NUDT11Q96G61 164 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 PLA2G2DQ9UNK4 145 aa13.34□□□□□ -0.27
CHD9-208ENST00000563410 IGHV3-64A0A075B6Q5 118 aa13.33□□□□□ -0.28
CHD9-208ENST00000563410 COTL1Q14019 142 aa13.33□□□□□ -0.28
CHD9-208ENST00000563410 CNFNQ9BYD5 112 aa13.33□□□□□ -0.28
CHD9-208ENST00000563410 UBE2L6O14933 153 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 CHTF8P0CG12 524 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 MT1HL1P0DM35 61 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 BCL2P10415 239 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 AMTP48728 403 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 EIF5AL1Q6IS14 154 aaKnown RBP13.32□□□□□ -0.28
CHD9-208ENST00000563410 BIN3Q9NQY0 253 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 AP5S1Q9NUS5 200 aa13.32□□□□□ -0.28
CHD9-208ENST00000563410 C15orf56Q8N910 161 aa13.31□□□□□ -0.28
CHD9-208ENST00000563410 GATD1Q8NB37 220 aa13.31□□□□□ -0.28
CHD9-208ENST00000563410 A0A087WYN8 130 aa13.3□□□□□ -0.28
CHD9-208ENST00000563410 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.3□□□□□ -0.28
CHD9-208ENST00000563410 SPACA4Q8TDM5 124 aa13.3□□□□□ -0.28
CHD9-208ENST00000563410 TRAV26-2A0A0B4J265 109 aa13.29□□□□□ -0.28
CHD9-208ENST00000563410 TWIST1Q15672 202 aa13.29□□□□□ -0.28
CHD9-208ENST00000563410 Q6ZRU5 148 aa13.29□□□□□ -0.28
CHD9-208ENST00000563410 RNF185Q96GF1 192 aa13.29□□□□□ -0.28
CHD9-208ENST00000563410 RNASE7Q9H1E1 156 aaKnown RBP13.29□□□□□ -0.28
CHD9-208ENST00000563410 GAGE12HA6NDE8 117 aa13.28□□□□□ -0.28
CHD9-208ENST00000563410 K7EN84 100 aa13.28□□□□□ -0.28
CHD9-208ENST00000563410 Q6ZNX1 250 aa13.27□□□□□ -0.29
CHD9-208ENST00000563410 DPH3Q96FX2 82 aa13.27□□□□□ -0.29
CHD9-208ENST00000563410 RPP21Q9H633 154 aaKnown RBP13.27□□□□□ -0.29
CHD9-208ENST00000563410 TNXBP22105 4242 aa13.27□□□□□ -0.29
CHD9-208ENST00000563410 IGKV3OR2-268A0A0C4DH90 116 aa13.26□□□□□ -0.29
CHD9-208ENST00000563410 OCC1Q8TAD7 63 aa13.26□□□□□ -0.29
CHD9-208ENST00000563410 RPL39LQ96EH5 51 aaKnown RBP13.26□□□□□ -0.29
CHD9-208ENST00000563410 PLAC8Q9NZF1 115 aa13.26□□□□□ -0.29
CHD9-208ENST00000563410 FOXA3P55318 350 aaPredicted RBP13.25□□□□□ -0.29
CHD9-208ENST00000563410 GTSF1Q8WW33 167 aa13.25□□□□□ -0.29
CHD9-208ENST00000563410 CFAP161Q6P656 301 aa13.24□□□□□ -0.29
CHD9-208ENST00000563410 SLC51BQ86UW2 128 aa13.24□□□□□ -0.29
CHD9-208ENST00000563410 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.23□□□□□ -0.29
CHD9-208ENST00000563410 IGKV2-29A2NJV5 120 aaPredicted RBP13.23□□□□□ -0.29
CHD9-208ENST00000563410 NCR2O95944 276 aa13.23□□□□□ -0.29
CHD9-208ENST00000563410 RPS10P46783 165 aaKnown RBP13.23□□□□□ -0.29
CHD9-208ENST00000563410 COX6A2Q02221 97 aa13.23□□□□□ -0.29
CHD9-208ENST00000563410 HIGD2BQ4VC39 106 aa13.23□□□□□ -0.29
CHD9-208ENST00000563410 CHCHD10Q8WYQ3 142 aaPredicted RBP13.23□□□□□ -0.29
CHD9-208ENST00000563410 TAGLN2P37802 199 aaKnown RBP13.22□□□□□ -0.29
CHD9-208ENST00000563410 AMMECR1LQ6DCA0 310 aa13.22□□□□□ -0.29
CHD9-208ENST00000563410 TCTE3Q8IZS6 198 aa13.22□□□□□ -0.29
CHD9-208ENST00000563410 H7C423 109 aa13.21□□□□□ -0.29
CHD9-208ENST00000563410 PHOX2AO14813 284 aa13.21□□□□□ -0.29
CHD9-208ENST00000563410 PRSS3P2Q8NHM4 247 aa13.21□□□□□ -0.29
CHD9-208ENST00000563410 SDHAF1A6NFY7 115 aa13.2□□□□□ -0.3
CHD9-208ENST00000563410 NDUFS6O75380 124 aaKnown RBP13.2□□□□□ -0.3
CHD9-208ENST00000563410 APCSP02743 223 aa13.2□□□□□ -0.3
CHD9-208ENST00000563410 FGF6P10767 208 aa13.2□□□□□ -0.3
CHD9-208ENST00000563410 RNASEKQ6P5S7 137 aaKnown RBP13.2□□□□□ -0.3
CHD9-208ENST00000563410 GVQW2A0A096LPI5 108 aaPredicted RBP13.19□□□□□ -0.3
CHD9-208ENST00000563410 FOXI1Q12951 378 aa13.19□□□□□ -0.3
CHD9-208ENST00000563410 FAM231BA6NCW3 169 aa13.18□□□□□ -0.3
CHD9-208ENST00000563410 TEX261Q6UWH6 196 aa13.18□□□□□ -0.3
CHD9-208ENST00000563410 SMIM15Q7Z3B0 74 aa13.18□□□□□ -0.3
CHD9-208ENST00000563410 IGKV2-24A0A0C4DH68 120 aa13.17□□□□□ -0.3
CHD9-208ENST00000563410 GATCO43716 136 aaKnown RBP13.17□□□□□ -0.3
CHD9-208ENST00000563410 GAS8-AS1O95177 125 aa13.17□□□□□ -0.3
CHD9-208ENST00000563410 MAJINQ3KP22 176 aa13.17□□□□□ -0.3
CHD9-208ENST00000563410 C7orf33Q8WU49 177 aa13.17□□□□□ -0.3
CHD9-208ENST00000563410 TRBV6-5A0A0K0K1A5 114 aa13.16□□□□□ -0.3
CHD9-208ENST00000563410 FAM231DQ6ZW35 169 aa13.16□□□□□ -0.3
CHD9-208ENST00000563410 OR5A1Q8NGJ0 315 aa13.16□□□□□ -0.3
CHD9-208ENST00000563410 TMEM250H0YL14 139 aa13.15□□□□□ -0.3
CHD9-208ENST00000563410 I3L3M4 83 aa13.15□□□□□ -0.3
CHD9-208ENST00000563410 ZNF25P17030 456 aaPredicted RBP13.15□□□□□ -0.3
CHD9-208ENST00000563410 STPG4Q8N801 248 aa13.15□□□□□ -0.3
CHD9-208ENST00000563410 A0A096LNI7 61 aa13.14□□□□□ -0.31
CHD9-208ENST00000563410 A8MWL6 223 aa13.14□□□□□ -0.31
CHD9-208ENST00000563410 ESDP10768 282 aa13.14□□□□□ -0.31
CHD9-208ENST00000563410 PMCHP20382 165 aa13.14□□□□□ -0.31
CHD9-208ENST00000563410 LINC00959A0A1B0GUT2 108 aa13.13□□□□□ -0.31
CHD9-208ENST00000563410 TSHBP01222 138 aa13.13□□□□□ -0.31
CHD9-208ENST00000563410 XCL1P47992 114 aa13.12□□□□□ -0.31
CHD9-208ENST00000563410 PRR3P79522 188 aaKnown RBP13.12□□□□□ -0.31
CHD9-208ENST00000563410 CT83Q5H943 113 aa13.12□□□□□ -0.31
CHD9-208ENST00000563410 CCL25O15444 150 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 LYPD6BQ8NI32 183 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 LINC00526Q96FQ7 95 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 TMEM101Q96IK0 257 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 BTF3L4Q96K17 158 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 TMEM242Q9NWH2 141 aa13.11□□□□□ -0.31
CHD9-208ENST00000563410 LRP2P98164 4655 aa13.1□□□□□ -0.31
CHD9-208ENST00000563410 POLR2KP53803 58 aaKnown RBP13.1□□□□□ -0.31
CHD9-208ENST00000563410 ALKAL2Q6UX46 152 aa13.1□□□□□ -0.31
CHD9-208ENST00000563410 ST20Q9HBF5 79 aa13.1□□□□□ -0.31
CHD9-208ENST00000563410 IGHV1-58A0A0C4DH39 117 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms