RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 AMTP48728 403 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 KRTAP10-4P60372 401 aaPredicted RBP6.59□□□□□ -1.35
LDLR-214ENST00000560628 COTL1Q14019 142 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 Q6ZNX1 250 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 C9orf163Q8N9P6 203 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 GATD1Q8NB37 220 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 MYCBP2O75592 4640 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 hCG_2014768A0A024R1R8 64 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 IGKV3OR2-268A0A0C4DH90 116 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 hDV102S1A0JD36 115 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 KRTAP29-1A8MX34 341 aaPredicted RBP6.58□□□□□ -1.36
LDLR-214ENST00000560628 PANO1I0J062 215 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 CEBPGP53567 150 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 ALKAL2Q6UX46 152 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 SDIM1Q6ZPB5 146 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 CLRN3Q8NCR9 226 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 GTSF1Q8WW33 167 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 RPL39LQ96EH5 51 aaKnown RBP6.58□□□□□ -1.36
LDLR-214ENST00000560628 PGLYRP4Q96LB8 373 aa6.58□□□□□ -1.36
LDLR-214ENST00000560628 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.58□□□□□ -1.36
LDLR-214ENST00000560628 TRAV8-4A0A0B4J246 113 aa6.57□□□□□ -1.36
LDLR-214ENST00000560628 GATCO43716 136 aaKnown RBP6.57□□□□□ -1.36
LDLR-214ENST00000560628 AKAP14Q86UN6 197 aa6.57□□□□□ -1.36
LDLR-214ENST00000560628 DPH3Q96FX2 82 aa6.57□□□□□ -1.36
LDLR-214ENST00000560628 CNFNQ9BYD5 112 aa6.57□□□□□ -1.36
LDLR-214ENST00000560628 SLPIP03973 132 aa6.56□□□□□ -1.36
LDLR-214ENST00000560628 RPL37AP61513 92 aaKnown RBP6.56□□□□□ -1.36
LDLR-214ENST00000560628 BLOC1S1P78537 153 aa6.56□□□□□ -1.36
LDLR-214ENST00000560628 SMIM15Q7Z3B0 74 aa6.56□□□□□ -1.36
LDLR-214ENST00000560628 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.55□□□□□ -1.36
LDLR-214ENST00000560628 IGKV2-29A2NJV5 120 aaPredicted RBP6.55□□□□□ -1.36
LDLR-214ENST00000560628 GAGE12HA6NDE8 117 aa6.55□□□□□ -1.36
LDLR-214ENST00000560628 A8MWL6 223 aa6.55□□□□□ -1.36
LDLR-214ENST00000560628 TMEM250H0YL14 139 aa6.55□□□□□ -1.36
LDLR-214ENST00000560628 AMMECR1LQ6DCA0 310 aa6.55□□□□□ -1.36
LDLR-214ENST00000560628 AP5S1Q9NUS5 200 aa6.55□□□□□ -1.36
LDLR-214ENST00000560628 GAS8-AS1O95177 125 aa6.54□□□□□ -1.36
LDLR-214ENST00000560628 PMCHP20382 165 aa6.54□□□□□ -1.36
LDLR-214ENST00000560628 CNBPP62633 177 aaKnown RBP6.54□□□□□ -1.36
LDLR-214ENST00000560628 RNASEKQ6P5S7 137 aaKnown RBP6.54□□□□□ -1.36
LDLR-214ENST00000560628 LYPD6BQ8NI32 183 aa6.54□□□□□ -1.36
LDLR-214ENST00000560628 EIF5A2Q9GZV4 153 aaKnown RBP6.54□□□□□ -1.36
LDLR-214ENST00000560628 IGHV3-64A0A075B6Q5 118 aa6.53□□□□□ -1.36
LDLR-214ENST00000560628 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.53□□□□□ -1.36
LDLR-214ENST00000560628 SDHAF1A6NFY7 115 aa6.53□□□□□ -1.36
LDLR-214ENST00000560628 CHTF8P0CG12 524 aa6.53□□□□□ -1.36
LDLR-214ENST00000560628 HNRNPA3P51991 378 aaKnown RBP6.53□□□□□ -1.36
LDLR-214ENST00000560628 FAM231DQ6ZW35 169 aa6.53□□□□□ -1.36
LDLR-214ENST00000560628 FAM231BA6NCW3 169 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 I3L3M4 83 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 NCR2O95944 276 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 OXTP01178 125 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 APCSP02743 223 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 FGF6P10767 208 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 HIGD2BQ4VC39 106 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 CFAP161Q6P656 301 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 TEX261Q6UWH6 196 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 C15orf56Q8N910 161 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 CHCHD10Q8WYQ3 142 aaPredicted RBP6.52□□□□□ -1.37
LDLR-214ENST00000560628 BORCS7Q96B45 105 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 SMIM7Q9BQ49 75 aa6.52□□□□□ -1.37
LDLR-214ENST00000560628 ZNF727A8MUV8 499 aa6.51□□□□□ -1.37
LDLR-214ENST00000560628 LINC01551Q86U37 167 aa6.51□□□□□ -1.37
LDLR-214ENST00000560628 ST20Q9HBF5 79 aa6.51□□□□□ -1.37
LDLR-214ENST00000560628 A0A087WYN8 130 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 TRBV6-5A0A0K0K1A5 114 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 A0A1B0GUT8 65 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 HIGD1CA8MV81 97 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 H7C423 109 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 SRP19P09132 144 aaKnown RBP6.5□□□□□ -1.37
LDLR-214ENST00000560628 RPS10P46783 165 aaKnown RBP6.5□□□□□ -1.37
LDLR-214ENST00000560628 COX6A2Q02221 97 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 CIRBPQ14011 172 aaKnown RBP6.5□□□□□ -1.37
LDLR-214ENST00000560628 CT83Q5H943 113 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 TSKUQ8WUA8 353 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 RNF185Q96GF1 192 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 TMEM242Q9NWH2 141 aa6.5□□□□□ -1.37
LDLR-214ENST00000560628 TSHBP01222 138 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 ESDP10768 282 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 RAB4AP20338 218 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 XCL1P47992 114 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 FOXI1Q12951 378 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 AMN1Q8IY45 258 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 OR5A1Q8NGJ0 315 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 PRSS3P2Q8NHM4 247 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 SPACA4Q8TDM5 124 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 TMEM101Q96IK0 257 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 BTF3L4Q96K17 158 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 FAM210AQ96ND0 272 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 TMEM191AQ9H0A3 160 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 OSTCQ9NRP0 149 aa6.49□□□□□ -1.37
LDLR-214ENST00000560628 IGKV2-24A0A0C4DH68 120 aa6.48□□□□□ -1.37
LDLR-214ENST00000560628 LINC00959A0A1B0GUT2 108 aa6.48□□□□□ -1.37
LDLR-214ENST00000560628 SMKR1H3BMG3 65 aa6.48□□□□□ -1.37
LDLR-214ENST00000560628 CCL25O15444 150 aa6.48□□□□□ -1.37
LDLR-214ENST00000560628 POLR2KP53803 58 aaKnown RBP6.48□□□□□ -1.37
LDLR-214ENST00000560628 LINC00526Q96FQ7 95 aa6.48□□□□□ -1.37
LDLR-214ENST00000560628 GVQW2A0A096LPI5 108 aaPredicted RBP6.47□□□□□ -1.37
LDLR-214ENST00000560628 A0A1B0GVG6 124 aa6.47□□□□□ -1.37
LDLR-214ENST00000560628 ZNF25P17030 456 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms