RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RPP21Q9H633 154 aaKnown RBP8.18□□□□□ -1.1
SNX1-209ENST00000559961 KRTAP29-1A8MX34 341 aaPredicted RBP8.17□□□□□ -1.1
SNX1-209ENST00000559961 RPL37AP61513 92 aaKnown RBP8.17□□□□□ -1.1
SNX1-209ENST00000559961 BLOC1S1P78537 153 aa8.17□□□□□ -1.1
SNX1-209ENST00000559961 C9orf163Q8N9P6 203 aa8.17□□□□□ -1.1
SNX1-209ENST00000559961 IGHV3-64A0A075B6Q5 118 aa8.15□□□□□ -1.1
SNX1-209ENST00000559961 GATCO43716 136 aaKnown RBP8.15□□□□□ -1.1
SNX1-209ENST00000559961 OXTP01178 125 aa8.15□□□□□ -1.1
SNX1-209ENST00000559961 IGKV3OR2-268A0A0C4DH90 116 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 A8MWL6 223 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 NCR2O95944 276 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 CTRLP40313 264 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 CEBPGP53567 150 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 SERTAD4-AS1Q5TG53 156 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 RNASEKQ6P5S7 137 aaKnown RBP8.14□□□□□ -1.11
SNX1-209ENST00000559961 OCC1Q8TAD7 63 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 BTF3L4Q96K17 158 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 RNASE7Q9H1E1 156 aaKnown RBP8.14□□□□□ -1.11
SNX1-209ENST00000559961 VPS13BQ7Z7G8 4022 aa8.14□□□□□ -1.11
SNX1-209ENST00000559961 SRRM2Q9UQ35 2752 aaKnown RBP8.14□□□□□ -1.11
SNX1-209ENST00000559961 FLG2Q5D862 2391 aaPredicted RBP8.13□□□□□ -1.11
SNX1-209ENST00000559961 HERC1Q15751 4861 aa8.13□□□□□ -1.11
SNX1-209ENST00000559961 TMEM250H0YL14 139 aa8.13□□□□□ -1.11
SNX1-209ENST00000559961 APCSP02743 223 aa8.13□□□□□ -1.11
SNX1-209ENST00000559961 CNBPP62633 177 aaKnown RBP8.13□□□□□ -1.11
SNX1-209ENST00000559961 C20orf203Q8NBC4 194 aa8.13□□□□□ -1.11
SNX1-209ENST00000559961 TMEM101Q96IK0 257 aa8.13□□□□□ -1.11
SNX1-209ENST00000559961 TRBV20OR9-2A0A075B6H5 130 aa8.12□□□□□ -1.11
SNX1-209ENST00000559961 IGLV4-60A0A075B6I1 120 aa8.12□□□□□ -1.11
SNX1-209ENST00000559961 H7C423 109 aa8.12□□□□□ -1.11
SNX1-209ENST00000559961 PMCHP20382 165 aa8.12□□□□□ -1.11
SNX1-209ENST00000559961 AKAP14Q86UN6 197 aa8.12□□□□□ -1.11
SNX1-209ENST00000559961 GAGE12HA6NDE8 117 aa8.11□□□□□ -1.11
SNX1-209ENST00000559961 GATD1Q8NB37 220 aa8.11□□□□□ -1.11
SNX1-209ENST00000559961 RNF185Q96GF1 192 aa8.11□□□□□ -1.11
SNX1-209ENST00000559961 CNFNQ9BYD5 112 aa8.11□□□□□ -1.11
SNX1-209ENST00000559961 EIF5A2Q9GZV4 153 aaKnown RBP8.11□□□□□ -1.11
SNX1-209ENST00000559961 PKIGQ9Y2B9 76 aa8.11□□□□□ -1.11
SNX1-209ENST00000559961 TRAV26-2A0A0B4J265 109 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 I3L3M4 83 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 KRTAP26-1Q6PEX3 210 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 SDIM1Q6ZPB5 146 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 FAM210AQ96ND0 272 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 DNAH8Q96JB1 4490 aa8.1□□□□□ -1.11
SNX1-209ENST00000559961 SDHAF1A6NFY7 115 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 K7EN84 100 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 ZNF25P17030 456 aaPredicted RBP8.09□□□□□ -1.11
SNX1-209ENST00000559961 RPS10P46783 165 aaKnown RBP8.09□□□□□ -1.11
SNX1-209ENST00000559961 SMAGPQ0VAQ4 97 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 FAM231DQ6ZW35 169 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 C7orf33Q8WU49 177 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 ST20Q9HBF5 79 aa8.09□□□□□ -1.11
SNX1-209ENST00000559961 CT83Q5H943 113 aa8.08□□□□□ -1.12
SNX1-209ENST00000559961 ALKAL2Q6UX46 152 aa8.08□□□□□ -1.12
SNX1-209ENST00000559961 CHCHD10Q8WYQ3 142 aaPredicted RBP8.08□□□□□ -1.12
SNX1-209ENST00000559961 RPL39LQ96EH5 51 aaKnown RBP8.08□□□□□ -1.12
SNX1-209ENST00000559961 SMIM7Q9BQ49 75 aa8.08□□□□□ -1.12
SNX1-209ENST00000559961 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.08□□□□□ -1.12
SNX1-209ENST00000559961 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.07□□□□□ -1.12
SNX1-209ENST00000559961 A0A1B0GUT8 65 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 IGKV2-29A2NJV5 120 aaPredicted RBP8.07□□□□□ -1.12
SNX1-209ENST00000559961 FGF6P10767 208 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 OR5A1Q8NGJ0 315 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 GTSF1Q8WW33 167 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 MRAP2Q96G30 205 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 GFRA4Q9GZZ7 299 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 MYCBP2O75592 4640 aa8.07□□□□□ -1.12
SNX1-209ENST00000559961 PPP1R17O96001 155 aa8.06□□□□□ -1.12
SNX1-209ENST00000559961 SS18Q15532 418 aa8.06□□□□□ -1.12
SNX1-209ENST00000559961 Q6ZNX1 250 aa8.06□□□□□ -1.12
SNX1-209ENST00000559961 FAM231BA6NCW3 169 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 ZNF727A8MUV8 499 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 NDUFS6O75380 124 aaKnown RBP8.05□□□□□ -1.12
SNX1-209ENST00000559961 FCER1GP30273 86 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 FOXA3P55318 350 aaPredicted RBP8.05□□□□□ -1.12
SNX1-209ENST00000559961 RIGQ13278 110 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 HIGD2BQ4VC39 106 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 TSKUQ8WUA8 353 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 LINC00474Q9P2X8 69 aa8.05□□□□□ -1.12
SNX1-209ENST00000559961 hCG_2014768A0A024R1R8 64 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 A0A087WYN8 130 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 TRBV6-5A0A0K0K1A5 114 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 HIGD1CA8MV81 97 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 XCL1P47992 114 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 COX6A2Q02221 97 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 MAJINQ3KP22 176 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 TMEM191AQ9H0A3 160 aa8.04□□□□□ -1.12
SNX1-209ENST00000559961 ZNF561-AS1K7EIQ3 104 aa8.03□□□□□ -1.12
SNX1-209ENST00000559961 VCYO14598 125 aa8.03□□□□□ -1.12
SNX1-209ENST00000559961 KRTAP10-4P60372 401 aaPredicted RBP8.03□□□□□ -1.12
SNX1-209ENST00000559961 CIRBPQ14011 172 aaKnown RBP8.03□□□□□ -1.12
SNX1-209ENST00000559961 Q6ZRU5 148 aa8.03□□□□□ -1.12
SNX1-209ENST00000559961 OSTCQ9NRP0 149 aa8.03□□□□□ -1.12
SNX1-209ENST00000559961 PLA2G2DQ9UNK4 145 aa8.03□□□□□ -1.12
SNX1-209ENST00000559961 IGHV1-58A0A0C4DH39 117 aa8.02□□□□□ -1.13
SNX1-209ENST00000559961 IGKV2-24A0A0C4DH68 120 aa8.02□□□□□ -1.13
SNX1-209ENST00000559961 MALP21145 153 aa8.02□□□□□ -1.13
SNX1-209ENST00000559961 LINC01551Q86U37 167 aa8.02□□□□□ -1.13
SNX1-209ENST00000559961 C15orf56Q8N910 161 aa8.02□□□□□ -1.13
SNX1-209ENST00000559961 LYPD6BQ8NI32 183 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms