RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 RASL11AQ6T310 242 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 ZFP2Q6ZN57 461 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 ZNRF2Q8NHG8 242 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 MRAP2Q96G30 205 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 URB1-AS1Q96HZ7 61 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 C18orf15Q96N68 181 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 HHLA3Q9XRX5 114 aa3.62□□□□□ -1.83
SPG11-220ENST00000559933 TRAV10A0A0B4J240 114 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 IGLL5B9A064 214 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 TCAPO15273 167 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 NUPR1O60356 82 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BKO60814 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BJP06899 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 LINC00694P0DN24 101 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BOP23527 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BBP33778 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 IFI27P40305 119 aaPredicted RBP3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BDP58876 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BCP62807 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 RHOHQ15669 191 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 PMCHL1Q16048 86 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST2H2BEQ16778 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.61□□□□□ -1.83
SPG11-220ENST00000559933 ORMDL3Q8N138 153 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 C18orf32Q8TCD1 76 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BHQ93079 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BNQ99877 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HIST1H2BMQ99879 126 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 NDUFAF3Q9BU61 184 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 PRO0255Q9UI72 69 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 HYDINQ4G0P3 5121 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 DNAH1Q9P2D7 4330 aa3.61□□□□□ -1.83
SPG11-220ENST00000559933 IGLV2-18A0A075B6J9 118 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 TRBV6-4A0A1B0GX49 114 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 SDHAF1A6NFY7 115 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 TSHBP01222 138 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 UBE2D3P61077 147 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 SUMO2P61956 95 aaKnown RBP3.6□□□□□ -1.83
SPG11-220ENST00000559933 UBE2D2P62837 147 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 COX19Q49B96 90 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 PDZD11Q5EBL8 140 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 PRADC1Q9BSG0 188 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 TMEM70Q9BUB7 260 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 SMIM2Q9BVW6 85 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 ST20Q9HBF5 79 aa3.6□□□□□ -1.83
SPG11-220ENST00000559933 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 TRBV6-5A0A0K0K1A5 114 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 IGKV2-29A2NJV5 120 aaPredicted RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 C1orf196B1AJZ1 125 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 SERF1AO75920 110 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 NDUFA6P56556 154 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 RPL36AP83881 106 aaKnown RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 RNASEKQ6P5S7 137 aaKnown RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 CEMP1Q6PRD7 247 aaPredicted RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 NTM-AS1Q6ZSK4 140 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 RPL36ALQ969Q0 106 aaKnown RBP3.59□□□□□ -1.83
SPG11-220ENST00000559933 MAP1LC3AQ9H492 121 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 NIT2Q9NQR4 276 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 ICOSQ9Y6W8 199 aa3.59□□□□□ -1.83
SPG11-220ENST00000559933 VPS13DQ5THJ4 4388 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 TENM2Q9NT68 2774 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 TRBV7-3A0A075B6L6 115 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 A0A096LNJ9 63 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 TRBV10-1A0A0K0K1A3 114 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 H7C1H1 209 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 PPBPP02775 128 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 PMCHP20382 165 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 POLR2KP53803 58 aaKnown RBP3.58□□□□□ -1.84
SPG11-220ENST00000559933 RPL39P62891 51 aaKnown RBP3.58□□□□□ -1.84
SPG11-220ENST00000559933 LINC00173Q6ZV60 143 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 FA2HQ7L5A8 372 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 NIT1Q86X76 327 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 BAGE3Q86Y29 109 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 FAM19A2Q8N3H0 131 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 ATP6V0E2Q8NHE4 81 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 MUC7Q8TAX7 377 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 CHCHD7Q9BUK0 85 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 APLNQ9ULZ1 77 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 ALMS1Q8TCU4 4167 aa3.58□□□□□ -1.84
SPG11-220ENST00000559933 IGHV1-24A0A0C4DH33 117 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 TRBV27A0A0K0K1C4 114 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 CIDEAO60543 219 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 FCER1GP30273 86 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 AMTP48728 403 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 RAB5BP61020 215 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 GAGE6Q13070 117 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 ESRGQ1W209 222 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 RNASE13Q5GAN3 156 aaKnown RBP3.57□□□□□ -1.84
SPG11-220ENST00000559933 ZC2HC1BQ5TFG8 222 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 WFDC10BQ8IUB3 73 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 Q8N8P6 123 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 PRSS3P2Q8NHM4 247 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 DNAJC30Q96LL9 226 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 OPRPNQ99935 248 aaPredicted RBP3.57□□□□□ -1.84
SPG11-220ENST00000559933 C20orf78Q9BR46 151 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 C1orf43Q9BWL3 253 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 SACSQ9NZJ4 4579 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 LINC00588Q9Y4M8 146 aa3.57□□□□□ -1.84
SPG11-220ENST00000559933 RYR2Q92736 4967 aa3.56□□□□□ -1.84
SPG11-220ENST00000559933 DNAH10Q8IVF4 4471 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms