RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NOTCH3Q9UM47 2321 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 SIVA1O15304 175 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 TMEM97Q5BJF2 176 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 BAALCQ8WXS3 180 aa12.12□□□□□ -0.47
LDLR-206ENST00000557958 NOP10Q9NPE3 64 aaKnown RBP12.12□□□□□ -0.47
LDLR-206ENST00000557958 CHTOPQ9Y3Y2 248 aaKnown RBP12.12□□□□□ -0.47
LDLR-206ENST00000557958 COL6A5A8TX70 2615 aa12.11□□□□□ -0.47
LDLR-206ENST00000557958 IGIPA6NJ69 53 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 Q6ZTI0 123 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 P0DMU3 169 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 FAM231AP0DMU4 169 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 FAM231CP0DMU5 169 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 PAPPA-AS1Q5QFB9 102 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 C20orf203Q8NBC4 194 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 OVOL2Q9BRP0 275 aa12.1□□□□□ -0.47
LDLR-206ENST00000557958 TRBV10-1A0A0K0K1A3 114 aa12.09□□□□□ -0.47
LDLR-206ENST00000557958 RPL39P62891 51 aaKnown RBP12.09□□□□□ -0.47
LDLR-206ENST00000557958 HSD52Q0P140 79 aa12.09□□□□□ -0.47
LDLR-206ENST00000557958 PMVKQ15126 192 aa12.09□□□□□ -0.47
LDLR-206ENST00000557958 HHLA3Q9XRX5 114 aa12.09□□□□□ -0.47
LDLR-206ENST00000557958 TRGV2A0A075B6R0 118 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 WIPF1O43516 503 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 NMUP48645 174 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 ZC2HC1BQ5TFG8 222 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 Q6ZSN1 163 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 PLAC8L1A1L4L8 177 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 A6NDN8 102 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 SMIM9A6NGZ8 99 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 PRSS29PA6NIE9 313 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 APOC4P55056 127 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 KIR2DL5BQ8NHK3 375 aa12.08□□□□□ -0.48
LDLR-206ENST00000557958 G3V4G9 280 aa12.07□□□□□ -0.48
LDLR-206ENST00000557958 K7EQD1 137 aa12.07□□□□□ -0.48
LDLR-206ENST00000557958 DEFB104AQ8WTQ1 72 aa12.07□□□□□ -0.48
LDLR-206ENST00000557958 ZNF479Q96JC4 524 aa12.07□□□□□ -0.48
LDLR-206ENST00000557958 H3BRM9 83 aa12.06□□□□□ -0.48
LDLR-206ENST00000557958 KRTAP10-11P60412 298 aa12.06□□□□□ -0.48
LDLR-206ENST00000557958 RPL36AP83881 106 aaKnown RBP12.06□□□□□ -0.48
LDLR-206ENST00000557958 COTL1Q14019 142 aa12.06□□□□□ -0.48
LDLR-206ENST00000557958 AMMECR1LQ6DCA0 310 aa12.06□□□□□ -0.48
LDLR-206ENST00000557958 RPL36ALQ969Q0 106 aaKnown RBP12.06□□□□□ -0.48
LDLR-206ENST00000557958 TRBV7-3A0A075B6L6 115 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 TRAV8-6A0A0B4J262 113 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 GAGE12BA1L429 117 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 GAGE7O76087 117 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 GAGE12FP0CL80 117 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 GAGE12GP0CL81 117 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 GAGE12IP0CL82 117 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 CST9LQ9H4G1 147 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 PYGO1Q9Y3Y4 419 aa12.05□□□□□ -0.48
LDLR-206ENST00000557958 NACAE9PAV3 2078 aa12.04□□□□□ -0.48
LDLR-206ENST00000557958 PCP4P48539 62 aa12.04□□□□□ -0.48
LDLR-206ENST00000557958 C9orf118A6NHY6 69 aa12.03□□□□□ -0.48
LDLR-206ENST00000557958 CRYBA4P53673 196 aa12.03□□□□□ -0.48
LDLR-206ENST00000557958 DAZ4Q86SG3 579 aaKnown RBP12.03□□□□□ -0.48
LDLR-206ENST00000557958 DAZ3Q9NR90 486 aaKnown RBP12.03□□□□□ -0.48
LDLR-206ENST00000557958 TCTAP57738 103 aa12.02□□□□□ -0.48
LDLR-206ENST00000557958 ZNRF2Q8NHG8 242 aa12.02□□□□□ -0.48
LDLR-206ENST00000557958 SPANXA1Q9NS26 97 aa12.02□□□□□ -0.48
LDLR-206ENST00000557958 HIGD1BQ9P298 99 aa12.02□□□□□ -0.48
LDLR-206ENST00000557958 TRBV6-4A0A1B0GX49 114 aa12.02□□□□□ -0.49
LDLR-206ENST00000557958 HERVK_113P61574 105 aa12.02□□□□□ -0.49
LDLR-206ENST00000557958 VCX2Q9H322 139 aa12.02□□□□□ -0.49
LDLR-206ENST00000557958 TRGV4A0A0C4DH28 118 aa12.01□□□□□ -0.49
LDLR-206ENST00000557958 OCIAD2Q56VL3 154 aa12.01□□□□□ -0.49
LDLR-206ENST00000557958 GTF2H5Q6ZYL4 71 aa12.01□□□□□ -0.49
LDLR-206ENST00000557958 SLC25A29Q8N8R3 303 aa12.01□□□□□ -0.49
LDLR-206ENST00000557958 PHLDA1Q8WV24 401 aaPredicted RBP12.01□□□□□ -0.49
LDLR-206ENST00000557958 IGHV4-30-4P0DP06 118 aa12□□□□□ -0.49
LDLR-206ENST00000557958 EMP1P54849 157 aa12□□□□□ -0.49
LDLR-206ENST00000557958 PCP2Q8IVA1 136 aa12□□□□□ -0.49
LDLR-206ENST00000557958 OR11H2Q8NH07 326 aa12□□□□□ -0.49
LDLR-206ENST00000557958 Q9UF83 564 aa12□□□□□ -0.49
LDLR-206ENST00000557958 IGLV4-3A0A075B6K6 122 aa12□□□□□ -0.49
LDLR-206ENST00000557958 EGFEM1PQ0D2K5 195 aa12□□□□□ -0.49
LDLR-206ENST00000557958 SMAGPQ0VAQ4 97 aa12□□□□□ -0.49
LDLR-206ENST00000557958 CHCHD7Q9BUK0 85 aa12□□□□□ -0.49
LDLR-206ENST00000557958 IGKV2D-26A0A0A0MRZ7 120 aa11.99□□□□□ -0.49
LDLR-206ENST00000557958 PRADC1Q9BSG0 188 aa11.99□□□□□ -0.49
LDLR-206ENST00000557958 X6R8D5 127 aa11.99□□□□□ -0.49
LDLR-206ENST00000557958 IGLV4-69A0A075B6H9 119 aa11.98□□□□□ -0.49
LDLR-206ENST00000557958 IGHV3-38A0A0C4DH36 116 aa11.98□□□□□ -0.49
LDLR-206ENST00000557958 GAGE10A6NGK3 116 aa11.98□□□□□ -0.49
LDLR-206ENST00000557958 K7EP34 96 aa11.98□□□□□ -0.49
LDLR-206ENST00000557958 PRB2P02812 416 aaPredicted RBP11.98□□□□□ -0.49
LDLR-206ENST00000557958 E9PLD3 99 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 UBE2D3P61077 147 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 UBE2D2P62837 147 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 SAMD5Q5TGI4 173 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 C11orf86A6NJI1 115 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 LYRM9A8MSI8 78 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 NFE4Q86UQ8 179 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 LINC00612Q8N6U2 182 aa11.97□□□□□ -0.49
LDLR-206ENST00000557958 GAGE12JA6NER3 117 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 K7ERU9 68 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 GAGE4Q13068 117 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 GAGE5Q13069 117 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 DEFB135Q30KP9 77 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 GAGE13Q4V321 117 aa11.96□□□□□ -0.49
LDLR-206ENST00000557958 TIMM21Q9BVV7 248 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms