RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 LOC100131303A0A0U1RQF7 123 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 A8MWV9 139 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 F8VRH5 84 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 H7C1H1 209 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 I3L3M4 83 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 TSHBP01222 138 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 DEFB135Q30KP9 77 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 C2orf91Q6ZV80 131 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 MAPKAPK5-AS1Q8N8E1 139 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 TRAV2A0A0B4J234 112 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 TRBV27A0A0K0K1C4 114 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 MRPS16Q9Y3D3 137 aaKnown RBP4.27□□□□□ -1.73
SYNE2-225ENST00000557060 C11orf86A6NJI1 115 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 CYSRT1A8MQ03 144 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 LBHQ53QV2 105 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-225ENST00000557060 BVES-AS1Q5T3Y7 98 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 NEXN-AS1Q8NBZ9 246 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 RNASE8Q8TDE3 154 aaKnown RBP4.27□□□□□ -1.73
SYNE2-225ENST00000557060 C19orf73Q9NVV2 129 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 FGF6P10767 208 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 PLNP26678 52 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 PTTG1IPP53801 180 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 TMEM97Q5BJF2 176 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 SCGB1D4Q6XE38 83 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 OR11H2Q8NH07 326 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 VCX2Q9H322 139 aa4.27□□□□□ -1.73
SYNE2-225ENST00000557060 TRGV4A0A0C4DH28 118 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 A0A0J9YXV3 536 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 LINC01546A6NGU7 62 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 IGIPA6NJ69 53 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 PRSS47A8MTI9 375 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 K7ERJ3 54 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 NPSP0C0P6 89 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 VAMP3Q15836 100 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 DGAT2L7PQ6IED9 249 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 SHISA2Q6UWI4 295 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 PRADC1Q9BSG0 188 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 TRBV25-1A0A075B6N4 114 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 HTN3P15516 51 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 C12orf54Q6X4T0 127 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 BOD1L2Q8IYS8 172 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 SLC25A29Q8N8R3 303 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 C20orf203Q8NBC4 194 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 TMEM263Q8WUH6 116 aaKnown RBP4.26□□□□□ -1.73
SYNE2-225ENST00000557060 LINC00467Q9BRT7 94 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 SPXQ9BT56 116 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 CST9LQ9H4G1 147 aa4.26□□□□□ -1.73
SYNE2-225ENST00000557060 TENM3Q9P273 2699 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 COTL1Q14019 142 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 PMVKQ15126 192 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 BEAN1Q3B7T3 259 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 SFTA2Q6UW10 78 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 CHAC1Q9BUX1 264 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 ZNF815PA8K554 130 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 A8MTW9 85 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 A8MZ25 164 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 HIST1H4GQ99525 98 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 TRAV13-1A0A0B4J241 112 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 ZMAT4Q9H898 229 aa4.25□□□□□ -1.73
SYNE2-225ENST00000557060 IGLV4-69A0A075B6H9 119 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 A0A0J9YY99 117 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 TRBV6-5A0A0K0K1A5 114 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 PRB2P02812 416 aaPredicted RBP4.24□□□□□ -1.73
SYNE2-225ENST00000557060 LINC00694P0DN24 101 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 FXYD2P54710 66 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 C3orf56Q8N813 242 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 C1QTNF4Q9BXJ3 329 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 NHP2Q9NX24 153 aaKnown RBP4.24□□□□□ -1.73
SYNE2-225ENST00000557060 IGLV4-3A0A075B6K6 122 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 TRBV7-3A0A075B6L6 115 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 TRAV8-3A0A0A6YYJ7 113 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 RHODO00212 210 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 SRSF9Q13242 221 aaKnown RBP eCLIP4.24□□□□□ -1.73
SYNE2-225ENST00000557060 Q6ZUT4 128 aa4.24□□□□□ -1.73
SYNE2-225ENST00000557060 RPL36AP83881 106 aaKnown RBP4.23□□□□□ -1.73
SYNE2-225ENST00000557060 C9orf66Q5T8R8 295 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 UFSP1Q6NVU6 142 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 LINC00469Q8N7U9 141 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 RPL36ALQ969Q0 106 aaKnown RBP4.23□□□□□ -1.73
SYNE2-225ENST00000557060 PLEKHB2Q96CS7 222 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 C16orf74Q96GX8 76 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 TRAV12-1A0A0B4J245 112 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 A0A0U1RRA0 63 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 PLAC8L1A1L4L8 177 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 H3BUT2 72 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 RS1O15537 224 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 NPC2P61916 151 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 LCE2CQ5TA81 110 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 AMMECR1LQ6DCA0 310 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 CSNK1G2-AS1Q8NCQ2 148 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 TMEM141Q96I45 108 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 K7EQD1 137 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 TAX1BP3O14907 124 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 TSPEAR-AS2P59090 65 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 RHOHQ15669 191 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 KRTAP24-1Q3LI83 254 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 ORAOV1Q8WV07 137 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 COX11Q9Y6N1 276 aa4.23□□□□□ -1.73
SYNE2-225ENST00000557060 MYMXA0A1B0GTQ4 84 aa4.22□□□□□ -1.73
SYNE2-225ENST00000557060 SPINK8P0C7L1 97 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 267.7 ms