RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 GAS8-AS1O95177 125 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 TCTAP57738 103 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 OCIAD2Q56VL3 154 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 PRR9Q5T870 116 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 ZC2HC1BQ5TFG8 222 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 LINC00336Q6ZUF6 198 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 PCP2Q8IVA1 136 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 C18orf15Q96N68 181 aa8.23□□□□□ -1.09
VPS33B-204ENST00000554660 TRBV25-1A0A075B6N4 114 aa8.22□□□□□ -1.09
VPS33B-204ENST00000554660 A0A1W2PPM0 123 aa8.22□□□□□ -1.09
VPS33B-204ENST00000554660 GATA1P15976 413 aaPredicted RBP8.22□□□□□ -1.09
VPS33B-204ENST00000554660 S100A4P26447 101 aaKnown RBP8.22□□□□□ -1.09
VPS33B-204ENST00000554660 RASL10AQ92737 203 aa8.22□□□□□ -1.09
VPS33B-204ENST00000554660 PHLDA3Q9Y5J5 127 aa8.22□□□□□ -1.09
VPS33B-204ENST00000554660 IGHV3OR16-13A0A075B7E8 117 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 IGHV3-74A0A0B4J1X5 117 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 PRB4P10163 310 aaPredicted RBP8.21□□□□□ -1.1
VPS33B-204ENST00000554660 FABP2P12104 132 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 FXYD7P58549 80 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 ANXA2RQ3ZCQ2 193 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 CEND1Q8N111 149 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 Q8NAQ8 132 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 NEXN-AS1Q8NBZ9 246 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 RHPN1-AS1Q9BWJ2 59 aa8.21□□□□□ -1.1
VPS33B-204ENST00000554660 MRPL35Q9NZE8 188 aaKnown RBP8.21□□□□□ -1.1
VPS33B-204ENST00000554660 IGKV2D-26A0A0A0MRZ7 120 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 TRBV6-5A0A0K0K1A5 114 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 A0A1B0GWB2 263 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 RNASE3P12724 160 aaKnown RBP8.2□□□□□ -1.1
VPS33B-204ENST00000554660 Q6ZTC4 211 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 ERASQ7Z444 233 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 KRTAP4-5Q9BYR2 181 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 KIF25-AS1Q9Y6Z4 181 aa8.2□□□□□ -1.1
VPS33B-204ENST00000554660 HSPG2P98160 4391 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 IGHV4-28A0A0C4DH34 117 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 PRSS29PA6NIE9 313 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 E9PLD3 99 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 H3BUT2 72 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 TMEM141Q96I45 108 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 SCGB3A1Q96QR1 104 aa8.19□□□□□ -1.1
VPS33B-204ENST00000554660 CHTOPQ9Y3Y2 248 aaKnown RBP8.19□□□□□ -1.1
VPS33B-204ENST00000554660 RTL8CO15255 209 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 RBMY1A1P0DJD3 496 aaKnown RBP8.18□□□□□ -1.1
VPS33B-204ENST00000554660 RBMY1CP0DJD4 496 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 RBMY1FQ15415 496 aaKnown RBP8.18□□□□□ -1.1
VPS33B-204ENST00000554660 C2orf66Q6UXQ4 117 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 NEGR1Q7Z3B1 354 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 DCANP1Q8TF63 244 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 TIMM17AQ99595 171 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 CYSLTR1Q9Y271 337 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 SPCS1Q9Y6A9 102 aa8.18□□□□□ -1.1
VPS33B-204ENST00000554660 TRAV26-2A0A0B4J265 109 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 M0R2N4 97 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 GCSHP23434 173 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 PCP4P48539 62 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 POLR2KP53803 58 aaKnown RBP8.17□□□□□ -1.1
VPS33B-204ENST00000554660 FXYD2P54710 66 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 LINC00315P59091 139 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 DEFB131AP59861 70 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 FAM159AQ6UWV7 190 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 C9orf85Q96MD7 179 aa8.17□□□□□ -1.1
VPS33B-204ENST00000554660 TRBV7-3A0A075B6L6 115 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 TRAV10A0A0B4J240 114 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 MYMXA0A1B0GTQ4 84 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 TMEM238LA0A1B0GVL6 79 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 A6NJY4 79 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 VCYO14598 125 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 DUSP14O95147 198 aaKnown RBP8.16□□□□□ -1.1
VPS33B-204ENST00000554660 RNASE4P34096 147 aaKnown RBP8.16□□□□□ -1.1
VPS33B-204ENST00000554660 CMC4P56277 68 aaPredicted RBP8.16□□□□□ -1.1
VPS33B-204ENST00000554660 RHOHQ15669 191 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 PIK3CD-AS1Q5SR53 167 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 C14orf178Q8N769 122 aaPredicted RBP8.16□□□□□ -1.1
VPS33B-204ENST00000554660 SYT8Q8NBV8 401 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 BAALCQ8WXS3 180 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 CELA1Q9UNI1 258 aa8.16□□□□□ -1.1
VPS33B-204ENST00000554660 TRAV2A0A0B4J234 112 aa8.15□□□□□ -1.1
VPS33B-204ENST00000554660 TRBV27A0A0K0K1C4 114 aa8.15□□□□□ -1.1
VPS33B-204ENST00000554660 GIG44P09565 113 aaPredicted RBP8.15□□□□□ -1.1
VPS33B-204ENST00000554660 HERVK_113P61574 105 aa8.15□□□□□ -1.1
VPS33B-204ENST00000554660 SNRPD3P62318 126 aaKnown RBP8.15□□□□□ -1.1
VPS33B-204ENST00000554660 KIR2DL4Q99706 377 aa8.15□□□□□ -1.1
VPS33B-204ENST00000554660 K7EQG2 157 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 MGPP08493 103 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 MIFP14174 115 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 RPL11P62913 178 aaKnown RBP8.14□□□□□ -1.11
VPS33B-204ENST00000554660 PMVKQ15126 192 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 STHQ8IWL8 128 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 X6R8D5 127 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 MUC4Q99102 2169 aa8.14□□□□□ -1.11
VPS33B-204ENST00000554660 A0A0J9YX75 114 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 IGIPA6NJ69 53 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 C11orf86A6NJI1 115 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 A8MTW9 85 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 F8W1H4 67 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 CRYBA4P53673 196 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 C12orf74Q32Q52 190 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 Q6ZQT7 251 aa8.13□□□□□ -1.11
VPS33B-204ENST00000554660 TRPT1Q86TN4 253 aaKnown RBP8.13□□□□□ -1.11
VPS33B-204ENST00000554660 PTH2Q96A98 100 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms