RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HIST1H2BAQ96A08 127 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 FMC1Q96HJ9 113 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 AQP10Q96PS8 301 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 FAM74A7A6NL05 159 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 INMT-MINDY4F8WBC2 141 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 UBE2G1P62253 170 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 SERF2P84101 59 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 ZNF726P1Q15940 193 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 SPANXN1Q5VSR9 72 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 CFAP161Q6P656 301 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 Q6ZRP5 223 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 TMEM243Q9BU79 118 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 TNFSF18Q9UNG2 199 aa6.46□□□□□ -1.38
VPS29-208ENST00000550267 A0A1B0GUV1 79 aa6.45□□□□□ -1.38
VPS29-208ENST00000550267 SNAI2O43623 268 aa6.45□□□□□ -1.38
VPS29-208ENST00000550267 SSNA1O43805 119 aa6.45□□□□□ -1.38
VPS29-208ENST00000550267 LTAP01374 205 aa6.45□□□□□ -1.38
VPS29-208ENST00000550267 SULT1A2P50226 295 aa6.45□□□□□ -1.38
VPS29-208ENST00000550267 IGKV3OR2-268A0A0C4DH90 116 aa6.44□□□□□ -1.38
VPS29-208ENST00000550267 CXCL1P09341 107 aa6.44□□□□□ -1.38
VPS29-208ENST00000550267 NKX6-2Q9C056 277 aaPredicted RBP6.44□□□□□ -1.38
VPS29-208ENST00000550267 CTXND1A0A1B0GTU2 59 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 FAM231BA6NCW3 169 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 M0QY20 66 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 MGPP08493 103 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 OR5AL1P0C617 328 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 SMIM17P0DL12 118 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 NKX2-5P52952 324 aaPredicted RBP6.43□□□□□ -1.38
VPS29-208ENST00000550267 AP1S3Q96PC3 154 aa6.43□□□□□ -1.38
VPS29-208ENST00000550267 GVQW2A0A096LPI5 108 aaPredicted RBP6.42□□□□□ -1.38
VPS29-208ENST00000550267 UBE2L6O14933 153 aa6.42□□□□□ -1.38
VPS29-208ENST00000550267 SUMO4Q6EEV6 95 aa6.42□□□□□ -1.38
VPS29-208ENST00000550267 LINC00474Q9P2X8 69 aa6.42□□□□□ -1.38
VPS29-208ENST00000550267 FAT4Q6V0I7 4981 aa6.42□□□□□ -1.38
VPS29-208ENST00000550267 A0A0U1RQV1 116 aa6.41□□□□□ -1.38
VPS29-208ENST00000550267 AKR1C3P42330 323 aa6.41□□□□□ -1.38
VPS29-208ENST00000550267 CHCHD10Q8WYQ3 142 aaPredicted RBP6.41□□□□□ -1.38
VPS29-208ENST00000550267 MARVELD1Q9BSK0 173 aa6.41□□□□□ -1.38
VPS29-208ENST00000550267 AMTP48728 403 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 IFITM3Q01628 133 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 CST9LP1Q5W188 147 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 ZNF664Q8N3J9 261 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 PRR26Q8N8Z3 221 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 STOML3Q8TAV4 291 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 LINC00526Q96FQ7 95 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 PGLYRP4Q96LB8 373 aa6.4□□□□□ -1.38
VPS29-208ENST00000550267 TRAV26-2A0A0B4J265 109 aa6.39□□□□□ -1.39
VPS29-208ENST00000550267 UPK1BO75841 260 aa6.39□□□□□ -1.39
VPS29-208ENST00000550267 FOXI1Q12951 378 aa6.39□□□□□ -1.39
VPS29-208ENST00000550267 RPL7L1Q6DKI1 246 aaKnown RBP6.39□□□□□ -1.39
VPS29-208ENST00000550267 RASL11AQ6T310 242 aa6.39□□□□□ -1.39
VPS29-208ENST00000550267 PSORS1C2Q9UIG4 136 aa6.39□□□□□ -1.39
VPS29-208ENST00000550267 MAP1LC3B2A6NCE7 125 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 FHITP49789 147 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 CACNG7P62955 275 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 COTL1Q14019 142 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 CARD19Q96LW7 228 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 TCEAL7Q9BRU2 100 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 MAP1LC3BQ9GZQ8 125 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 PKIGQ9Y2B9 76 aa6.38□□□□□ -1.39
VPS29-208ENST00000550267 A0A1W2PNN7 141 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 PRR4Q16378 134 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 BAGE2Q86Y30 109 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 S100ZQ8WXG8 99 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 TPPP3Q9BW30 176 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 NIT2Q9NQR4 276 aa6.37□□□□□ -1.39
VPS29-208ENST00000550267 PAGE4O60829 102 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 MT-ND6P03923 174 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 PTTG1IPP53801 180 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 GAGE2BQ13066 116 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 AKR1C8PQ5T2L2 129 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 AMMECR1LQ6DCA0 310 aa6.36□□□□□ -1.39
VPS29-208ENST00000550267 hCG_2014768A0A024R1R8 64 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 BORCS7-ASMTA0A0B4J1R7 106 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 IGHV1-58A0A0C4DH39 117 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 S100A9P06702 114 aaKnown RBP6.35□□□□□ -1.39
VPS29-208ENST00000550267 IGLC6P0CF74 106 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 XCL1P47992 114 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 SYCNQ0VAF6 134 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 Q5BKY6 102 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 C1orf137Q5JT78 98 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 RNASEKQ6P5S7 137 aaKnown RBP6.35□□□□□ -1.39
VPS29-208ENST00000550267 FER1L6-AS1Q8NA97 138 aa6.35□□□□□ -1.39
VPS29-208ENST00000550267 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.34□□□□□ -1.39
VPS29-208ENST00000550267 IGKV2-29A2NJV5 120 aaPredicted RBP6.34□□□□□ -1.39
VPS29-208ENST00000550267 CCL25O15444 150 aa6.34□□□□□ -1.39
VPS29-208ENST00000550267 Q6ZNX1 250 aa6.34□□□□□ -1.39
VPS29-208ENST00000550267 LINC00299Q6ZSB3 139 aa6.34□□□□□ -1.39
VPS29-208ENST00000550267 PHF5AQ7RTV0 110 aaKnown RBP6.34□□□□□ -1.39
VPS29-208ENST00000550267 MED28Q9H204 178 aa6.34□□□□□ -1.39
VPS29-208ENST00000550267 LOC107984640A0A0U1RRK4 108 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 FGF6P10767 208 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 NTF3P20783 257 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 C9orf116Q5BN46 136 aaPredicted RBP6.33□□□□□ -1.4
VPS29-208ENST00000550267 OR5A1Q8NGJ0 315 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 DIRC1Q969H9 104 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 NDUFA13Q9P0J0 144 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 ALG5Q9Y673 324 aa6.33□□□□□ -1.4
VPS29-208ENST00000550267 LINC00959A0A1B0GUT2 108 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 IGLV7-43P04211 117 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms