RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TWIST1Q15672 202 aa8.49□□□□□ -1.05
RTN3-213ENST00000543552 RPP21Q9H633 154 aaKnown RBP8.49□□□□□ -1.05
RTN3-213ENST00000543552 AP5S1Q9NUS5 200 aa8.49□□□□□ -1.05
RTN3-213ENST00000543552 IGLV10-54A0A075B6I4 117 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 hDV102S1A0JD36 115 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 RPL37AP61513 92 aaKnown RBP8.48□□□□□ -1.05
RTN3-213ENST00000543552 CNBPP62633 177 aaKnown RBP8.48□□□□□ -1.05
RTN3-213ENST00000543552 KRTAP26-1Q6PEX3 210 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 C20orf203Q8NBC4 194 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 NUDT10Q8NFP7 164 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 NUDT11Q96G61 164 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 CNFNQ9BYD5 112 aa8.48□□□□□ -1.05
RTN3-213ENST00000543552 OXTP01178 125 aa8.47□□□□□ -1.05
RTN3-213ENST00000543552 TEX261Q6UWH6 196 aa8.47□□□□□ -1.05
RTN3-213ENST00000543552 KRTAP10-4P60372 401 aaPredicted RBP8.46□□□□□ -1.06
RTN3-213ENST00000543552 IGLV4-60A0A075B6I1 120 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 IGHV3-64A0A075B6Q5 118 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 TMEM250H0YL14 139 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 NCR2O95944 276 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 AMMECR1LQ6DCA0 310 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 CFAP161Q6P656 301 aa8.45□□□□□ -1.06
RTN3-213ENST00000543552 RNASE7Q9H1E1 156 aaKnown RBP8.45□□□□□ -1.06
RTN3-213ENST00000543552 BLOC1S1P78537 153 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 SERTAD4-AS1Q5TG53 156 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 SDIM1Q6ZPB5 146 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 GATD1Q8NB37 220 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 OCC1Q8TAD7 63 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 BORCS7Q96B45 105 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 RNF185Q96GF1 192 aa8.44□□□□□ -1.06
RTN3-213ENST00000543552 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
RTN3-213ENST00000543552 A8MWL6 223 aa8.43□□□□□ -1.06
RTN3-213ENST00000543552 H7C423 109 aa8.43□□□□□ -1.06
RTN3-213ENST00000543552 K7EN84 100 aa8.43□□□□□ -1.06
RTN3-213ENST00000543552 APCSP02743 223 aa8.43□□□□□ -1.06
RTN3-213ENST00000543552 NDUFA5Q16718 116 aa8.43□□□□□ -1.06
RTN3-213ENST00000543552 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.43□□□□□ -1.06
RTN3-213ENST00000543552 TRAV26-2A0A0B4J265 109 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 GATCO43716 136 aaKnown RBP8.42□□□□□ -1.06
RTN3-213ENST00000543552 FAM231DQ6ZW35 169 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 AKAP14Q86UN6 197 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 SLC7A5P1Q8MH63 180 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 DPH3Q96FX2 82 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 GFRA4Q9GZZ7 299 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 FAT3Q8TDW7 4589 aa8.42□□□□□ -1.06
RTN3-213ENST00000543552 ZNF25P17030 456 aaPredicted RBP8.41□□□□□ -1.06
RTN3-213ENST00000543552 CIRBPQ14011 172 aaKnown RBP8.41□□□□□ -1.06
RTN3-213ENST00000543552 CT83Q5H943 113 aa8.41□□□□□ -1.06
RTN3-213ENST00000543552 RNASEKQ6P5S7 137 aaKnown RBP8.41□□□□□ -1.06
RTN3-213ENST00000543552 GTSF1Q8WW33 167 aa8.41□□□□□ -1.06
RTN3-213ENST00000543552 PKHD1L1Q86WI1 4243 aa8.41□□□□□ -1.06
RTN3-213ENST00000543552 IGKV3OR2-268A0A0C4DH90 116 aa8.4□□□□□ -1.06
RTN3-213ENST00000543552 GAGE12HA6NDE8 117 aa8.4□□□□□ -1.06
RTN3-213ENST00000543552 SDHAF1A6NFY7 115 aa8.4□□□□□ -1.06
RTN3-213ENST00000543552 CTAG1AP78358 180 aa8.4□□□□□ -1.06
RTN3-213ENST00000543552 RPL39LQ96EH5 51 aaKnown RBP8.4□□□□□ -1.06
RTN3-213ENST00000543552 BTF3L4Q96K17 158 aa8.4□□□□□ -1.06
RTN3-213ENST00000543552 I3L3M4 83 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 FGF6P10767 208 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 PMCHP20382 165 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 CEBPGP53567 150 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 ALKAL2Q6UX46 152 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 Q6ZNX1 250 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 TMEM101Q96IK0 257 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 PKIGQ9Y2B9 76 aa8.39□□□□□ -1.07
RTN3-213ENST00000543552 TRBV6-5A0A0K0K1A5 114 aa8.38□□□□□ -1.07
RTN3-213ENST00000543552 PANO1I0J062 215 aa8.38□□□□□ -1.07
RTN3-213ENST00000543552 NDUFS6O75380 124 aaKnown RBP8.38□□□□□ -1.07
RTN3-213ENST00000543552 RPS10P46783 165 aaKnown RBP8.38□□□□□ -1.07
RTN3-213ENST00000543552 C15orf56Q8N910 161 aa8.38□□□□□ -1.07
RTN3-213ENST00000543552 SPACA4Q8TDM5 124 aa8.38□□□□□ -1.07
RTN3-213ENST00000543552 CHCHD10Q8WYQ3 142 aaPredicted RBP8.38□□□□□ -1.07
RTN3-213ENST00000543552 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.37□□□□□ -1.07
RTN3-213ENST00000543552 IGKV2-29A2NJV5 120 aaPredicted RBP8.37□□□□□ -1.07
RTN3-213ENST00000543552 FOXA3P55318 350 aaPredicted RBP8.37□□□□□ -1.07
RTN3-213ENST00000543552 LYPD6BQ8NI32 183 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 C7orf33Q8WU49 177 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 MRAP2Q96G30 205 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 SMIM7Q9BQ49 75 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 EIF5A2Q9GZV4 153 aaKnown RBP8.37□□□□□ -1.07
RTN3-213ENST00000543552 ST20Q9HBF5 79 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 HMCN2Q8NDA2 5059 aa8.37□□□□□ -1.07
RTN3-213ENST00000543552 A0A087WYN8 130 aa8.36□□□□□ -1.07
RTN3-213ENST00000543552 GVQW2A0A096LPI5 108 aaPredicted RBP8.36□□□□□ -1.07
RTN3-213ENST00000543552 A0A1B0GUT8 65 aa8.36□□□□□ -1.07
RTN3-213ENST00000543552 FAM231BA6NCW3 169 aa8.36□□□□□ -1.07
RTN3-213ENST00000543552 OR5A1Q8NGJ0 315 aa8.36□□□□□ -1.07
RTN3-213ENST00000543552 TSKUQ8WUA8 353 aa8.36□□□□□ -1.07
RTN3-213ENST00000543552 HIGD1CA8MV81 97 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 SLPIP03973 132 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 SMAGPQ0VAQ4 97 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 HIGD2BQ4VC39 106 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 Q6ZRU5 148 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 LINC01551Q86U37 167 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 TMEM191AQ9H0A3 160 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 PLAC8Q9NZF1 115 aa8.35□□□□□ -1.07
RTN3-213ENST00000543552 ZNF727A8MUV8 499 aa8.34□□□□□ -1.07
RTN3-213ENST00000543552 PPP1R17O96001 155 aa8.34□□□□□ -1.07
RTN3-213ENST00000543552 CHTF8P0CG12 524 aa8.34□□□□□ -1.07
RTN3-213ENST00000543552 XCL1P47992 114 aa8.34□□□□□ -1.07
RTN3-213ENST00000543552 HNRNPA3P51991 378 aaKnown RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms