RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SFRP2Q96HF1 295 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 NPCDR1Q9BY65 106 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 Q9H521 79 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 VCX3AQ9NNX9 186 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 OTORQ9NRC9 128 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 IGKV2D-30A0A075B6S6 120 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 TMSB15BA0A087X1C1 80 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 IGHV1-24A0A0C4DH33 117 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 TRBV6-1A0A0K0K1D8 114 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 IGSF23A1L1A6 192 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 M0R036 132 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 TPT1P13693 172 aaKnown RBP2.82□□□□□ -1.96
LIMS1-214ENST00000542845 HBG1P69891 147 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 HBG2P69892 147 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 TMEM97Q5BJF2 176 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 TOMM5Q8N4H5 51 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 C20orf203Q8NBC4 194 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 MITD1Q8WV92 249 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 CARD19Q96LW7 228 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 SDHCQ99643 169 aaPredicted RBP2.82□□□□□ -1.96
LIMS1-214ENST00000542845 SLC25A21Q9BQT8 299 aaPredicted RBP2.82□□□□□ -1.96
LIMS1-214ENST00000542845 NAA50Q9GZZ1 169 aaKnown RBP2.82□□□□□ -1.96
LIMS1-214ENST00000542845 IL36BQ9NZH7 164 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 FLVCR2Q9UPI3 526 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 PSG8Q9UQ74 426 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 PKIGQ9Y2B9 76 aa2.82□□□□□ -1.96
LIMS1-214ENST00000542845 IGLV7-46A0A075B6I9 117 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 LOC107984640A0A0U1RRK4 108 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 PCP4L1A6NKN8 68 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 FABP5P3A8MUU1 101 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 UBE2L6O14933 153 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 HMGB3O15347 200 aaKnown RBP2.81□□□□□ -1.96
LIMS1-214ENST00000542845 KRTAP1-4P0C5Y4 121 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 PVALBP20472 110 aaPredicted RBP2.81□□□□□ -1.96
LIMS1-214ENST00000542845 KRTAP5-9P26371 169 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 SULT1A1P50225 295 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 RAB4BP61018 213 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 FLI1Q01543 452 aaPredicted RBP2.81□□□□□ -1.96
LIMS1-214ENST00000542845 ATP6V1FQ16864 119 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 KHDC3LQ587J8 217 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 C9orf116Q5BN46 136 aaPredicted RBP2.81□□□□□ -1.96
LIMS1-214ENST00000542845 STX12Q86Y82 276 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 FAM218AQ96MZ4 157 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 AQP10Q96PS8 301 aa2.81□□□□□ -1.96
LIMS1-214ENST00000542845 RSL24D1Q9UHA3 163 aaKnown RBP2.81□□□□□ -1.96
LIMS1-214ENST00000542845 A0A087WXM4 84 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 GVQW2A0A096LPI5 108 aaPredicted RBP2.8□□□□□ -1.96
LIMS1-214ENST00000542845 MUC21A0A140T8X8 626 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 FAM74A7A6NL05 159 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 C17orf112F2Z3M2 114 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 BCL2P10415 239 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 TAS2R45P59539 299 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 AP3S2P59780 193 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 RPL18AQ02543 176 aaKnown RBP2.8□□□□□ -1.96
LIMS1-214ENST00000542845 SYCNQ0VAF6 134 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 CNPY1Q3B7I2 92 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 FAM74A3Q4VXF1 159 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 PYDC2Q56P42 97 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 EIF5AL1Q6IS14 154 aaKnown RBP2.8□□□□□ -1.96
LIMS1-214ENST00000542845 TMEM252Q8N6L7 170 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 TYMSOSQ8TAI1 123 aa2.8□□□□□ -1.96
LIMS1-214ENST00000542845 CHCHD10Q8WYQ3 142 aaPredicted RBP2.8□□□□□ -1.96
LIMS1-214ENST00000542845 A0A1B0GUV1 79 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 A0A1W2PPV4 95 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 KRBOX1C9JBD0 128 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 TCRAP04437 139 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 UBE2BP63146 152 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 IQCJQ1A5X6 159 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 SAPCD1Q5SSQ6 148 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 LINC00173Q6ZV60 143 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 KRTAP11-1Q8IUC1 163 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 ZFP82Q8N141 532 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 LINC00337Q8N6G1 96 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 OR5C1Q8NGR4 320 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 TMEM243Q9BU79 118 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 KRTAP4-1Q9BYQ7 146 aa2.79□□□□□ -1.96
LIMS1-214ENST00000542845 TRAV6A0A075B6T7 132 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 SERTM2A0A1B0GWG4 89 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 H0Y8G0 127 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 H3BMQ9 156 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 MGPP08493 103 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 SMIM17P0DL12 118 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 FGF6P10767 208 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 RPL12P30050 165 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 TAGLN2P37802 199 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 XCL1P47992 114 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 RIGQ13278 110 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 TPRXLQ17RH7 258 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 AMMECR1LQ6DCA0 310 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 RNASEKQ6P5S7 137 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 FAM19A5Q7Z5A7 132 aaPredicted RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 SMIM29Q86T20 159 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 OPRPNQ99935 248 aaPredicted RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 MRPS26Q9BYN8 205 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 WDR61Q9GZS3 305 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 KCNIP2Q9NS61 270 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 EPDR1Q9UM22 224 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 CARHSP1Q9Y2V2 147 aaKnown RBP2.78□□□□□ -1.96
LIMS1-214ENST00000542845 ARL2-SNX15V9GYD0 113 aa2.78□□□□□ -1.96
LIMS1-214ENST00000542845 IGLV4-69A0A075B6H9 119 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 265.6 ms