RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 C9orf66Q5T8R8 295 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 ZNRF2Q8NHG8 242 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 C1QTNF4Q9BXJ3 329 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 CST9LQ9H4G1 147 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 IGLV4-69A0A075B6H9 119 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-216ENST00000541410 IGKV2-29A2NJV5 120 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-216ENST00000541410 PMVKQ15126 192 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 RHOHQ15669 191 aa10.4□□□□□ -0.74
CLIP1-216ENST00000541410 FBN1P35555 2871 aaKnown RBP10.39□□□□□ -0.75
CLIP1-216ENST00000541410 TRGV2A0A075B6R0 118 aa10.39□□□□□ -0.75
CLIP1-216ENST00000541410 TIMM17AQ99595 171 aa10.39□□□□□ -0.75
CLIP1-216ENST00000541410 C16orf74Q96GX8 76 aa10.39□□□□□ -0.75
CLIP1-216ENST00000541410 EDA2RQ9HAV5 297 aa10.39□□□□□ -0.75
CLIP1-216ENST00000541410 TMEM141Q96I45 108 aa10.38□□□□□ -0.75
CLIP1-216ENST00000541410 SLC25A29Q8N8R3 303 aa10.38□□□□□ -0.75
CLIP1-216ENST00000541410 STAB1Q9NY15 2570 aa10.37□□□□□ -0.75
CLIP1-216ENST00000541410 LOC100131303A0A0U1RQF7 123 aa10.37□□□□□ -0.75
CLIP1-216ENST00000541410 DAZ2Q13117 558 aaKnown RBP10.37□□□□□ -0.75
CLIP1-216ENST00000541410 C12orf54Q6X4T0 127 aa10.37□□□□□ -0.75
CLIP1-216ENST00000541410 CHCHD7Q9BUK0 85 aa10.37□□□□□ -0.75
CLIP1-216ENST00000541410 IGLV4-3A0A075B6K6 122 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 TRBV25-1A0A075B6N4 114 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 GAGE12JA6NER3 117 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 INSL3P51460 131 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 GAGE1Q13065 139 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 GAGE4Q13068 117 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 GAGE5Q13069 117 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 GAGE13Q4V321 117 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 TMEM97Q5BJF2 176 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 TMEM170BQ5T4T1 132 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 TRAV4A0A0B4J268 109 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 DEFB4AO15263 64 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 DEFB130BP0DP73 79 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 DEFB130AP0DP74 79 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 LURAP1LQ8IV03 231 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 FAM104AQ969W3 186 aa10.36□□□□□ -0.75
CLIP1-216ENST00000541410 K7EP13 123 aa10.35□□□□□ -0.75
CLIP1-216ENST00000541410 K7EQD1 137 aa10.35□□□□□ -0.75
CLIP1-216ENST00000541410 COTL1Q14019 142 aa10.35□□□□□ -0.75
CLIP1-216ENST00000541410 PRADC1Q9BSG0 188 aa10.35□□□□□ -0.75
CLIP1-216ENST00000541410 TRBV7-3A0A075B6L6 115 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 DLEU1O43261 78 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 DEFB135Q30KP9 77 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 KRTAP24-1Q3LI83 254 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 IGHV3-64A0A075B6Q5 118 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 A0A0J9YXV3 536 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 OR11H2Q8NH07 326 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 VCX2Q9H322 139 aa10.34□□□□□ -0.75
CLIP1-216ENST00000541410 LINC01549A6NIU2 74 aa10.33□□□□□ -0.76
CLIP1-216ENST00000541410 CHAC1Q9BUX1 264 aa10.33□□□□□ -0.76
CLIP1-216ENST00000541410 DNAJC30Q96LL9 226 aa10.33□□□□□ -0.76
CLIP1-216ENST00000541410 TRGV4A0A0C4DH28 118 aa10.32□□□□□ -0.76
CLIP1-216ENST00000541410 GCSHP23434 173 aa10.32□□□□□ -0.76
CLIP1-216ENST00000541410 RPL36AP83881 106 aaKnown RBP10.32□□□□□ -0.76
CLIP1-216ENST00000541410 RPL36ALQ969Q0 106 aaKnown RBP10.32□□□□□ -0.76
CLIP1-216ENST00000541410 OVOL2Q9BRP0 275 aa10.32□□□□□ -0.76
CLIP1-216ENST00000541410 UBE2D4Q9Y2X8 147 aa10.32□□□□□ -0.76
CLIP1-216ENST00000541410 X6R8D5 127 aa10.32□□□□□ -0.76
CLIP1-216ENST00000541410 E9PLD3 99 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 MAST4O15021 2626 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 SIVA1O15304 175 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 LINC00694P0DN24 101 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 OXLD1Q5BKU9 147 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 Q6ZUT4 128 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 TAX1BP3O14907 124 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 HSD52Q0P140 79 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 NTM-AS1Q6ZSK4 140 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 PKD1L1Q8TDX9 2849 aa10.31□□□□□ -0.76
CLIP1-216ENST00000541410 TSPEAR-AS2P59090 65 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 ORAOV1Q8WV07 137 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 NAA38Q9BRA0 125 aaKnown RBP10.3□□□□□ -0.76
CLIP1-216ENST00000541410 MYMXA0A1B0GTQ4 84 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 ZNF815PA8K554 130 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 PLEKHB2Q96CS7 222 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 COX11Q9Y6N1 276 aa10.3□□□□□ -0.76
CLIP1-216ENST00000541410 FXYD2P54710 66 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 NPSP0C0P6 89 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 UBE2D3P61077 147 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 UBE2D2P62837 147 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 FHL2Q14192 279 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 RAB37Q96AX2 223 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 PYGO1Q9Y3Y4 419 aa10.29□□□□□ -0.76
CLIP1-216ENST00000541410 PAPPA-AS1Q5QFB9 102 aa10.28□□□□□ -0.76
CLIP1-216ENST00000541410 WFDC9Q8NEX5 89 aa10.28□□□□□ -0.76
CLIP1-216ENST00000541410 AMELXQ99217 191 aa10.28□□□□□ -0.76
CLIP1-216ENST00000541410 TRBV10-1A0A0K0K1A3 114 aa10.28□□□□□ -0.76
CLIP1-216ENST00000541410 ZNF22P17026 224 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-216ENST00000541410 LINC00469Q8N7U9 141 aa10.28□□□□□ -0.76
CLIP1-216ENST00000541410 HERVK_113P61574 105 aa10.27□□□□□ -0.77
CLIP1-216ENST00000541410 DGAT2L7PQ6IED9 249 aa10.27□□□□□ -0.77
CLIP1-216ENST00000541410 NFE4Q86UQ8 179 aa10.27□□□□□ -0.77
CLIP1-216ENST00000541410 HIGD1BQ9P298 99 aa10.27□□□□□ -0.77
CLIP1-216ENST00000541410 SCGB1D4Q6XE38 83 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 K7ERJ3 54 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 IGHV4-30-4P0DP06 118 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 FAM222AQ5U5X8 452 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 C3orf56Q8N813 242 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 HIST1H4GQ99525 98 aa10.26□□□□□ -0.77
CLIP1-216ENST00000541410 SPANXA1Q9NS26 97 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms