RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PDZD2O15018 2839 aa9.19□□□□□ -0.94
RNF4-222ENST00000541204 TRPT1Q86TN4 253 aaKnown RBP9.19□□□□□ -0.94
RNF4-222ENST00000541204 PRO1854Q9UHT4 67 aa9.19□□□□□ -0.94
RNF4-222ENST00000541204 TMEM223A0PJW6 202 aa9.19□□□□□ -0.94
RNF4-222ENST00000541204 LYRM7Q5U5X0 104 aa9.19□□□□□ -0.94
RNF4-222ENST00000541204 ODF3Q96PU9 254 aa9.19□□□□□ -0.94
RNF4-222ENST00000541204 DNAJC9-AS1A6NH13 148 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 SCGB1C2P0DMR2 95 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 FHL3Q13643 280 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 RHOHQ15669 191 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 TMEM61Q8N0U2 210 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 C20orf203Q8NBC4 194 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 RAX2Q96IS3 184 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 UNC79Q9P2D8 2635 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 HECTD1Q9ULT8 2610 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 A4D1N5 150 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 Q6ZSV7 163 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 CDIP1Q9H305 208 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 AKAP9Q99996 3911 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 FASNP49327 2511 aaKnown RBP9.18□□□□□ -0.94
RNF4-222ENST00000541204 TRAV2A0A0B4J234 112 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 A0A0J9YXV3 536 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 LEPROTO15243 131 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 ZNF22P17026 224 aaPredicted RBP9.18□□□□□ -0.94
RNF4-222ENST00000541204 RNF152Q8N8N0 203 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 CARD19Q96LW7 228 aa9.18□□□□□ -0.94
RNF4-222ENST00000541204 I3L3M4 83 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 RHODO00212 210 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 EIF4EBP3O60516 100 aaPredicted RBP9.17□□□□□ -0.94
RNF4-222ENST00000541204 ESM1Q9NQ30 184 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 TRBV20-1A0A075B6N2 111 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 IGHV3-73A0A0B4J1V6 119 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 CIDEAO60543 219 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 TEN1Q86WV5 123 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 Q8N2B8 174 aa9.17□□□□□ -0.94
RNF4-222ENST00000541204 IGLV4-3A0A075B6K6 122 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 H7C2G1 150 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 DYNLRB2Q8TF09 96 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 VCX2Q9H322 139 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 NOTCH3Q9UM47 2321 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 RBMY1A1P0DJD3 496 aaKnown RBP9.16□□□□□ -0.94
RNF4-222ENST00000541204 RBMY1CP0DJD4 496 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 RBMY1FQ15415 496 aaKnown RBP9.16□□□□□ -0.94
RNF4-222ENST00000541204 MUSTN1Q8IVN3 82 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 YAE1D1Q9NRH1 226 aa9.16□□□□□ -0.94
RNF4-222ENST00000541204 C4orf3Q8WVX3 66 aa9.15□□□□□ -0.94
RNF4-222ENST00000541204 PPDPFLQ8WWR9 84 aa9.15□□□□□ -0.94
RNF4-222ENST00000541204 A8MWV9 139 aa9.15□□□□□ -0.95
RNF4-222ENST00000541204 PROK1P58294 105 aa9.15□□□□□ -0.95
RNF4-222ENST00000541204 GCN1Q92616 2671 aaKnown RBP9.15□□□□□ -0.95
RNF4-222ENST00000541204 A0A1B0GV72 72 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 CEMP1Q6PRD7 247 aaPredicted RBP9.14□□□□□ -0.95
RNF4-222ENST00000541204 TMEM263Q8WUH6 116 aaKnown RBP9.14□□□□□ -0.95
RNF4-222ENST00000541204 SPXQ9BT56 116 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 ADARB2-AS1A8MUL3 147 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 PLA2G2AP14555 144 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 SBSPONQ8IVN8 264 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 ANKRD29Q8N6D5 301 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 PEMTQ9UBM1 199 aa9.14□□□□□ -0.95
RNF4-222ENST00000541204 IGHV3-33P01772 117 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 MT-ATP8P03928 68 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 RNASE13Q5GAN3 156 aaKnown RBP9.13□□□□□ -0.95
RNF4-222ENST00000541204 JMJD1CQ15652 2540 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 RBMY1BA6NDE4 496 aaKnown RBP9.13□□□□□ -0.95
RNF4-222ENST00000541204 RBMY1EA6NEQ0 496 aaKnown RBP9.13□□□□□ -0.95
RNF4-222ENST00000541204 SPINK8P0C7L1 97 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 RBMY1DP0C7P1 496 aaKnown RBP9.13□□□□□ -0.95
RNF4-222ENST00000541204 CD28P10747 220 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 CKS1BP61024 79 aa9.13□□□□□ -0.95
RNF4-222ENST00000541204 TRGV11A0A075B6L2 103 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 J3QKU1 62 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 XGP55808 180 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 FAM104AQ969W3 186 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 ERG28Q9UKR5 140 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 A0A0J9YXY3 114 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 C9JAW5 83 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 H3BMM0 161 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 IGHV3-30-3P0DP02 117 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 Q6ZUT4 128 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 Q9UF83 564 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 TRAV8-3A0A0A6YYJ7 113 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 CRYBA4P53673 196 aa9.12□□□□□ -0.95
RNF4-222ENST00000541204 KMT2BQ9UMN6 2715 aaPredicted RBP9.11□□□□□ -0.95
RNF4-222ENST00000541204 A0A0B4J2C4 111 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 M0R2P5 195 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 SLC25A20O43772 301 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 Q1RN00 199 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 DEFB114Q30KQ6 69 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 SMR3AQ99954 134 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 TIMM21Q9BVV7 248 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 MAP6D1Q9H9H5 199 aa9.11□□□□□ -0.95
RNF4-222ENST00000541204 KRTAP1-1Q07627 177 aa9.1□□□□□ -0.95
RNF4-222ENST00000541204 CITED2Q99967 270 aaPredicted RBP9.1□□□□□ -0.95
RNF4-222ENST00000541204 IGHV3OR16-12A0A075B7B8 117 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 PYGO1Q9Y3Y4 419 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 TNFRSF18Q9Y5U5 241 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 A8MZ25 164 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 PRSS2P07478 247 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 MRPS36P82909 103 aaKnown RBP9.09□□□□□ -0.95
RNF4-222ENST00000541204 Q6ZSN1 163 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms