RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TIMM17BO60830 172 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 DNAL4O96015 105 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 CCKP06307 115 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 MRPS36P82909 103 aaKnown RBP7.01□□□□□ -1.29
CLIP1-214ENST00000540539 MRGPRG-AS1Q2M3A8 158 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 FAM222AQ5U5X8 452 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 ZNF833PQ6ZTB9 187 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 DEFB104AQ8WTQ1 72 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 RELNP78509 3460 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 COX7A2LO14548 114 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 NXPH4O95158 308 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 PRB1P04280 392 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 CD164Q04900 197 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 RNF7Q9UBF6 113 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 ZNF462Q96JM2 2506 aa7.01□□□□□ -1.29
CLIP1-214ENST00000540539 TRBV7-6A0A0J9YX20 115 aa7□□□□□ -1.29
CLIP1-214ENST00000540539 RPL28P46779 137 aaKnown RBP7□□□□□ -1.29
CLIP1-214ENST00000540539 MIAQ16674 131 aa7□□□□□ -1.29
CLIP1-214ENST00000540539 TMEM141Q96I45 108 aa7□□□□□ -1.29
CLIP1-214ENST00000540539 TRAV23DV6A0A075B6W5 121 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 Q8N2B8 174 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 TIMM17AQ99595 171 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 SPTBN1Q01082 2364 aaKnown RBP6.99□□□□□ -1.29
CLIP1-214ENST00000540539 MYO18BQ8IUG5 2567 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-214ENST00000540539 SRRM5B3KS81 715 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 SNRPD3P62318 126 aaKnown RBP6.99□□□□□ -1.29
CLIP1-214ENST00000540539 MSMPQ1L6U9 139 aa6.99□□□□□ -1.29
CLIP1-214ENST00000540539 FAM110DQ8TAY7 271 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-214ENST00000540539 I3L2K1 104 aa6.98□□□□□ -1.29
CLIP1-214ENST00000540539 RBM3P98179 157 aaKnown RBP6.98□□□□□ -1.29
CLIP1-214ENST00000540539 TNP2Q05952 138 aa6.98□□□□□ -1.29
CLIP1-214ENST00000540539 C1orf158Q8N1D5 194 aa6.98□□□□□ -1.29
CLIP1-214ENST00000540539 ZNF843Q8N446 348 aa6.98□□□□□ -1.29
CLIP1-214ENST00000540539 TRBV12-3P01733 135 aa6.98□□□□□ -1.29
CLIP1-214ENST00000540539 IGHV3-30-3P0DP02 117 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 GNLYP22749 145 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 RPL27AP46776 148 aaKnown RBP6.97□□□□□ -1.29
CLIP1-214ENST00000540539 NDPQ00604 133 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 VSIG2Q96IQ7 327 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 BPESC1Q9GZL8 116 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 FLNCQ14315 2725 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 PRAC2D3DTV9 90 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 C9orf129Q5T035 196 aaKnown RBP6.97□□□□□ -1.29
CLIP1-214ENST00000540539 Q6ZRU5 148 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 COPS9Q8WXC6 57 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 OPRPNQ99935 248 aaPredicted RBP6.97□□□□□ -1.29
CLIP1-214ENST00000540539 C14orf132Q9NPU4 83 aa6.97□□□□□ -1.29
CLIP1-214ENST00000540539 M0R381 172 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 MGPP08493 103 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 IGHV1-2P23083 117 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 GPHB5Q86YW7 130 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 PRR15Q8IV56 129 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 FAM218AQ96MZ4 157 aa6.96□□□□□ -1.29
CLIP1-214ENST00000540539 ADGRG4Q8IZF6 3080 aa6.96□□□□□ -1.3
CLIP1-214ENST00000540539 WFDC9Q8NEX5 89 aa6.96□□□□□ -1.3
CLIP1-214ENST00000540539 MPLKIPQ8TAP9 179 aa6.96□□□□□ -1.3
CLIP1-214ENST00000540539 PAX4O43316 350 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 ADORA2A-AS1P86434 159 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 CFHR3Q02985 330 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 KLKP1Q107X0 134 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 TRBV27A0A0K0K1C4 114 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 F8WEM9 126 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 FAM229BQ4G0N7 80 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 LINC00574Q9H8X3 128 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 Q9HAA7 133 aa6.95□□□□□ -1.3
CLIP1-214ENST00000540539 A0A0J9YXV3 536 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 SAA4P35542 130 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 NDUFA12Q9UI09 145 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 TEX22C9J3V5 150 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 BUB1B-PAK6H3BSN5 160 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 RMI2Q96E14 147 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 MOB4Q9Y3A3 225 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 SNURFQ9Y675 71 aa6.94□□□□□ -1.3
CLIP1-214ENST00000540539 USP9XQ93008 2570 aaPredicted RBP6.94□□□□□ -1.3
CLIP1-214ENST00000540539 K7EIM0 57 aa6.93□□□□□ -1.3
CLIP1-214ENST00000540539 SOSTDC1Q6X4U4 206 aa6.93□□□□□ -1.3
CLIP1-214ENST00000540539 SMAD5-AS1Q9Y6J3 95 aa6.93□□□□□ -1.3
CLIP1-214ENST00000540539 SPTAN1Q13813 2472 aaKnown RBP6.93□□□□□ -1.3
CLIP1-214ENST00000540539 C9orf47Q6ZRZ4 202 aa6.93□□□□□ -1.3
CLIP1-214ENST00000540539 U3KQE9 123 aa6.93□□□□□ -1.3
CLIP1-214ENST00000540539 ANKHD1Q8IWZ3 2542 aaKnown RBP6.93□□□□□ -1.3
CLIP1-214ENST00000540539 PPP1R17O96001 155 aa6.92□□□□□ -1.3
CLIP1-214ENST00000540539 S4R3C0 116 aa6.92□□□□□ -1.3
CLIP1-214ENST00000540539 UBR5O95071 2799 aaPredicted RBP6.92□□□□□ -1.3
CLIP1-214ENST00000540539 IGHV3-72A0A0B4J1Y9 119 aa6.92□□□□□ -1.3
CLIP1-214ENST00000540539 IGHV1-69P01742 117 aa6.92□□□□□ -1.3
CLIP1-214ENST00000540539 POLR2KP53803 58 aaKnown RBP6.92□□□□□ -1.3
CLIP1-214ENST00000540539 TRAV7A0A075B6U4 112 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 PLAC8L1A1L4L8 177 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 TMEM30BQ3MIR4 351 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 LRRK2Q5S007 2527 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 DOPEY1Q5JWR5 2465 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 FBXL19-AS1Q494R0 122 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 CCDC140Q96MF4 163 aa6.91□□□□□ -1.3
CLIP1-214ENST00000540539 A8MZ25 164 aa6.9□□□□□ -1.3
CLIP1-214ENST00000540539 STHQ8IWL8 128 aa6.9□□□□□ -1.3
CLIP1-214ENST00000540539 ITLN2Q8WWU7 325 aaPredicted RBP6.9□□□□□ -1.3
CLIP1-214ENST00000540539 OBSCN-AS1Q96MR7 158 aa6.9□□□□□ -1.3
CLIP1-214ENST00000540539 HOXD3P31249 432 aaPredicted RBP6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms