RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 RNASE3P12724 160 aaKnown RBP7.15□□□□□ -1.26
CLIP1-212ENST00000540304 DEFB114Q30KQ6 69 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 CHCHD5Q9BSY4 110 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 NDUFA7O95182 113 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 MALP21145 153 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 DEFB131AP59861 70 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 ZNF415Q09FC8 603 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 SPINK13Q1W4C9 94 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 PRO0628Q9UI54 55 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 NOTCH3Q9UM47 2321 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 TRAV12-2A0A075B6T6 113 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 GATA1P15976 413 aaPredicted RBP7.14□□□□□ -1.27
CLIP1-212ENST00000540304 TRPT1Q86TN4 253 aaKnown RBP7.14□□□□□ -1.27
CLIP1-212ENST00000540304 NHP2Q9NX24 153 aaKnown RBP7.14□□□□□ -1.27
CLIP1-212ENST00000540304 NXPH4O95158 308 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 CD7P09564 240 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 HLA-DRB4P13762 266 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 Q5XG85 94 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 PPDPFLQ8WWR9 84 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 HLA-DRB4X5D2U9 266 aa7.14□□□□□ -1.27
CLIP1-212ENST00000540304 HIVEP2P31629 2446 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 MUC4Q99102 2169 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 TRAV26-2A0A0B4J265 109 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 KNCNA6PVL3 124 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 A8MTW9 85 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 ATP5LO75964 103 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 CRYGDP07320 174 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 TIRAPP58753 221 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 CFAP126Q5VTH2 177 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 Q6Q795 121 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 DPH3P1Q9H4G8 78 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 NXT2Q9NPJ8 142 aaKnown RBP7.13□□□□□ -1.27
CLIP1-212ENST00000540304 A0A096LNJ9 63 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 LINC01546A6NGU7 62 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 MAP6D1Q9H9H5 199 aa7.13□□□□□ -1.27
CLIP1-212ENST00000540304 H3BMM0 161 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 HBDP02042 147 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 RPS28P62857 69 aaKnown RBP7.12□□□□□ -1.27
CLIP1-212ENST00000540304 SRSF9Q13242 221 aaKnown RBP eCLIP7.12□□□□□ -1.27
CLIP1-212ENST00000540304 C9orf153Q5TBE3 101 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 NRACQ8N912 160 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 ZNF747Q9BV97 191 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 IGHV1OR15-1A0A075B7D0 117 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 C14orf178Q8N769 122 aaPredicted RBP7.12□□□□□ -1.27
CLIP1-212ENST00000540304 IL17DQ8TAD2 202 aa7.12□□□□□ -1.27
CLIP1-212ENST00000540304 IGHV3-16A0A0C4DH30 117 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 OXTP01178 125 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 PROK1P58294 105 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 C10orf126Q8N4M7 172 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 Q8N8P6 123 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 ZNF256Q9Y2P7 627 aaPredicted RBP7.11□□□□□ -1.27
CLIP1-212ENST00000540304 TMEM262E9PQX1 116 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 LINC01545Q5VT33 79 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 Q8N1Y9 231 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 C9orf85Q96MD7 179 aa7.11□□□□□ -1.27
CLIP1-212ENST00000540304 RBMY1BA6NDE4 496 aaKnown RBP7.1□□□□□ -1.27
CLIP1-212ENST00000540304 RBMY1EA6NEQ0 496 aaKnown RBP7.1□□□□□ -1.27
CLIP1-212ENST00000540304 MGPP08493 103 aa7.1□□□□□ -1.27
CLIP1-212ENST00000540304 RBMY1DP0C7P1 496 aaKnown RBP7.1□□□□□ -1.27
CLIP1-212ENST00000540304 PCP2Q8IVA1 136 aa7.1□□□□□ -1.27
CLIP1-212ENST00000540304 IGLV2-18A0A075B6J9 118 aa7.1□□□□□ -1.27
CLIP1-212ENST00000540304 FAM236DA0A1B0GTK5 79 aa7.1□□□□□ -1.27
CLIP1-212ENST00000540304 FAM236CP0DP71 79 aa7.1□□□□□ -1.27
CLIP1-212ENST00000540304 FN1P02751 2386 aaKnown RBP7.09□□□□□ -1.27
CLIP1-212ENST00000540304 TRGV11A0A075B6L2 103 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 LINC00336Q6ZUF6 198 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 TEN1Q86WV5 123 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 POM121L12Q8N7R1 296 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 JPT2Q9H910 190 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 KIF25-AS1Q9Y6Z4 181 aa7.09□□□□□ -1.27
CLIP1-212ENST00000540304 NSD1Q96L73 2696 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-212ENST00000540304 ADARB2-AS1A8MUL3 147 aa7.09□□□□□ -1.28
CLIP1-212ENST00000540304 RBMY1A1P0DJD3 496 aaKnown RBP7.09□□□□□ -1.28
CLIP1-212ENST00000540304 RBMY1CP0DJD4 496 aa7.09□□□□□ -1.28
CLIP1-212ENST00000540304 FCER1GP30273 86 aa7.09□□□□□ -1.28
CLIP1-212ENST00000540304 RBMY1FQ15415 496 aaKnown RBP7.09□□□□□ -1.28
CLIP1-212ENST00000540304 DEFB104AQ8WTQ1 72 aa7.09□□□□□ -1.28
CLIP1-212ENST00000540304 INAFM1C9JVW0 142 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 PPP1R17O96001 155 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 ODF3L2Q3SX64 289 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 ZNF561-AS1K7EIQ3 104 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 LINC00315P59091 139 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 SUMO2P61956 95 aaKnown RBP7.08□□□□□ -1.28
CLIP1-212ENST00000540304 IFI27L1Q96BM0 104 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 SMIM2Q9BVW6 85 aa7.08□□□□□ -1.28
CLIP1-212ENST00000540304 VWFP04275 2813 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 LAGE3Q14657 143 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 NSUN5P1Q3KNT7 163 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 RPL39LQ96EH5 51 aaKnown RBP7.07□□□□□ -1.28
CLIP1-212ENST00000540304 HIVEP1P15822 2718 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 PRM2P04554 102 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 TMEM158Q8WZ71 300 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 C2CD3Q4AC94 2353 aa7.07□□□□□ -1.28
CLIP1-212ENST00000540304 FLNBO75369 2602 aaKnown RBP7.06□□□□□ -1.28
CLIP1-212ENST00000540304 TENM1Q9UKZ4 2725 aa7.06□□□□□ -1.28
CLIP1-212ENST00000540304 A0A087WWL8 130 aa7.06□□□□□ -1.28
CLIP1-212ENST00000540304 NDUFA11Q86Y39 141 aa7.06□□□□□ -1.28
CLIP1-212ENST00000540304 INSP01308 110 aa7.06□□□□□ -1.28
CLIP1-212ENST00000540304 HTN1P15515 57 aa7.06□□□□□ -1.28
CLIP1-212ENST00000540304 RRN3P1Q2M238 152 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms