RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, human

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC78-215	ENST00000538176	SRP19	P09132	144 aa	Known RBP	14.07	□□□□□ -0.16
CCDC78-215	ENST00000538176	TSKU	Q8WUA8	353 aa		14.07	□□□□□ -0.16
CCDC78-215	ENST00000538176		A0A1B0GVG6	124 aa		14.06	□□□□□ -0.16
CCDC78-215	ENST00000538176	NCR2	O95944	276 aa		14.06	□□□□□ -0.16
CCDC78-215	ENST00000538176	REG3A	Q06141	175 aa		14.06	□□□□□ -0.16
CCDC78-215	ENST00000538176	FAM30A	Q9NZY2	134 aa		14.06	□□□□□ -0.16
CCDC78-215	ENST00000538176	SMR3B	P02814	79 aa	Predicted RBP	14.05	□□□□□ -0.16
CCDC78-215	ENST00000538176	AMT	P48728	403 aa		14.05	□□□□□ -0.16
CCDC78-215	ENST00000538176	SMDT1	Q9H4I9	107 aa		14.05	□□□□□ -0.16
CCDC78-215	ENST00000538176		A0A1B0GUT8	65 aa		14.04	□□□□□ -0.16
CCDC78-215	ENST00000538176	HLA-DQA1	P01909	254 aa		14.04	□□□□□ -0.16
CCDC78-215	ENST00000538176	INAFM2	P0DMQ5	153 aa		14.04	□□□□□ -0.16
CCDC78-215	ENST00000538176	DGAT2L7P	Q6IED9	249 aa		14.04	□□□□□ -0.16
CCDC78-215	ENST00000538176	CLRN3	Q8NCR9	226 aa		14.04	□□□□□ -0.16
CCDC78-215	ENST00000538176	HIGD1C	A8MV81	97 aa		14.03	□□□□□ -0.16
CCDC78-215	ENST00000538176		H7C423	109 aa		14.03	□□□□□ -0.16
CCDC78-215	ENST00000538176	TMEM241	Q24JQ0	296 aa		14.03	□□□□□ -0.16
CCDC78-215	ENST00000538176	C20orf203	Q8NBC4	194 aa		14.03	□□□□□ -0.16
CCDC78-215	ENST00000538176	TRAV26-2	A0A0B4J265	109 aa		14.02	□□□□□ -0.17
CCDC78-215	ENST00000538176	USP17L23	D6RBM5	183 aa		14.02	□□□□□ -0.17
CCDC78-215	ENST00000538176	TMEM191A	Q9H0A3	160 aa		14.02	□□□□□ -0.17
CCDC78-215	ENST00000538176	PEA15	Q15121	130 aa		14.01	□□□□□ -0.17
CCDC78-215	ENST00000538176	TRBV6-5	A0A0K0K1A5	114 aa		14	□□□□□ -0.17
CCDC78-215	ENST00000538176	KRTAP26-1	Q6PEX3	210 aa		14	□□□□□ -0.17
CCDC78-215	ENST00000538176	CLPSL2	Q6UWE3	100 aa		14	□□□□□ -0.17
CCDC78-215	ENST00000538176	IGLV4-60	A0A075B6I1	120 aa		13.99	□□□□□ -0.17
CCDC78-215	ENST00000538176	SDHAF1	A6NFY7	115 aa		13.99	□□□□□ -0.17
CCDC78-215	ENST00000538176		I3L3M4	83 aa		13.99	□□□□□ -0.17
CCDC78-215	ENST00000538176	APCS	P02743	223 aa		13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	PLA2G1B	P04054	148 aa	Known RBP	13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	HAMP	P81172	84 aa		13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	RIG	Q13278	110 aa		13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	AMMECR1L	Q6DCA0	310 aa		13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	ISOC2	Q96AB3	205 aa		13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	RPL39L	Q96EH5	51 aa	Known RBP	13.98	□□□□□ -0.17
CCDC78-215	ENST00000538176	PPP1R17	O96001	155 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	PMCH	P20382	165 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	MRAP2	Q96G30	205 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	CHAC1	Q9BUX1	264 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	ST20	Q9HBF5	79 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	NAT8	Q9UHE5	227 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176		V9GYV3	84 aa		13.97	□□□□□ -0.17
CCDC78-215	ENST00000538176	PRSS1	P07477	247 aa		13.96	□□□□□ -0.17
CCDC78-215	ENST00000538176	LINC01620	Q4KN68	170 aa		13.96	□□□□□ -0.17
CCDC78-215	ENST00000538176	NAT8B	Q9UHF3	227 aa		13.96	□□□□□ -0.17
CCDC78-215	ENST00000538176	IGLV10-54	A0A075B6I4	117 aa		13.95	□□□□□ -0.18
CCDC78-215	ENST00000538176	ZNF25	P17030	456 aa	Predicted RBP	13.95	□□□□□ -0.18
CCDC78-215	ENST00000538176	RPL23	P62829	140 aa	Known RBP	13.95	□□□□□ -0.18
CCDC78-215	ENST00000538176	C9orf163	Q8N9P6	203 aa		13.95	□□□□□ -0.18
CCDC78-215	ENST00000538176	RAB4A	P20338	218 aa		13.94	□□□□□ -0.18
CCDC78-215	ENST00000538176	NUP35	Q8NFH5	326 aa		13.94	□□□□□ -0.18
CCDC78-215	ENST00000538176	DEFB104A	Q8WTQ1	72 aa		13.94	□□□□□ -0.18
CCDC78-215	ENST00000538176	FAT1	Q14517	4588 aa		13.93	□□□□□ -0.18
CCDC78-215	ENST00000538176	CFAP161	Q6P656	301 aa		13.93	□□□□□ -0.18
CCDC78-215	ENST00000538176	SCX	Q7RTU7	201 aa		13.93	□□□□□ -0.18
CCDC78-215	ENST00000538176	BTF3L4	Q96K17	158 aa		13.93	□□□□□ -0.18
CCDC78-215	ENST00000538176	ADIRF	Q15847	76 aa		13.92	□□□□□ -0.18
CCDC78-215	ENST00000538176	RNASEK	Q6P5S7	137 aa	Known RBP	13.92	□□□□□ -0.18
CCDC78-215	ENST00000538176	TMEM101	Q96IK0	257 aa		13.92	□□□□□ -0.18
CCDC78-215	ENST00000538176	AP5S1	Q9NUS5	200 aa		13.92	□□□□□ -0.18
CCDC78-215	ENST00000538176	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	TRBV27	A0A0K0K1C4	114 aa		13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176		A0A1B0GW15	77 aa		13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	FGF6	P10767	208 aa		13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	POLR2K	P53803	58 aa	Known RBP	13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	CNBP	P62633	177 aa	Known RBP	13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	LINC00528	Q8N1L1	170 aa		13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	RNF185	Q96GF1	192 aa		13.91	□□□□□ -0.18
CCDC78-215	ENST00000538176	AMN1	Q8IY45	258 aa		13.9	□□□□□ -0.18
CCDC78-215	ENST00000538176	DNAH8	Q96JB1	4490 aa		13.9	□□□□□ -0.19
CCDC78-215	ENST00000538176	SRRM2	Q9UQ35	2752 aa	Known RBP	13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	SMIM27	A0A1W2PRY6	76 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	hDV102S1	A0JD36	115 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176		C9JQL5	133 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	VCY	O14598	125 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	ESD	P10768	282 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	SMAGP	Q0VAQ4	97 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	CIRBP-AS1	Q8TBR5	109 aa		13.89	□□□□□ -0.19
CCDC78-215	ENST00000538176	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	13.88	□□□□□ -0.19
CCDC78-215	ENST00000538176	IGKV2-29	A2NJV5	120 aa	Predicted RBP	13.88	□□□□□ -0.19
CCDC78-215	ENST00000538176	LINC00862	A6NCI5	91 aa		13.88	□□□□□ -0.19
CCDC78-215	ENST00000538176	PPP1R2P9	O14990	202 aa		13.87	□□□□□ -0.19
CCDC78-215	ENST00000538176	S100A8	P05109	93 aa		13.87	□□□□□ -0.19
CCDC78-215	ENST00000538176	OR5A1	Q8NGJ0	315 aa		13.87	□□□□□ -0.19
CCDC78-215	ENST00000538176	TSHB	P01222	138 aa		13.86	□□□□□ -0.19
CCDC78-215	ENST00000538176	SRSF3	P84103	164 aa	Known RBP	13.86	□□□□□ -0.19
CCDC78-215	ENST00000538176	IGKV3OR2-268	A0A0C4DH90	116 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	GAGE12H	A6NDE8	117 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	GAS8-AS1	O95177	125 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	RPS10	P46783	165 aa	Known RBP	13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	SUMO2	P61956	95 aa	Known RBP	13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	FAM104B	Q5XKR9	115 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	SDIM1	Q6ZPB5	146 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	MRPL52	Q86TS9	123 aa	Known RBP	13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	KIR2DL4	Q99706	377 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	VPS13B	Q7Z7G8	4022 aa		13.85	□□□□□ -0.19
CCDC78-215	ENST00000538176	C7orf77	A4D0Y5	90 aa		13.84	□□□□□ -0.19
CCDC78-215	ENST00000538176	FCER1G	P30273	86 aa		13.84	□□□□□ -0.19
CCDC78-215	ENST00000538176	TMEM242	Q9NWH2	141 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms