RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TMEM218A2RU14 115 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 EREGO14944 169 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 PPP1R2P9O14990 202 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 PSCAO43653 123 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 ADCYAP1P18509 176 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 POLR2KP53803 58 aaKnown RBP8.59□□□□□ -1.03
VPS28-216ENST00000533806 COTL1Q14019 142 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 FAM104BQ5XKR9 115 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 CDPF1Q6NVV7 123 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 TMEM243Q9BU79 118 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 TMEM70Q9BUB7 260 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 COX11Q9Y6N1 276 aa8.59□□□□□ -1.03
VPS28-216ENST00000533806 NCR2O95944 276 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 FUSP35637 526 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS28-216ENST00000533806 Q0VG73 95 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 Q8N814 137 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 NRACQ8N912 160 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 C20orf203Q8NBC4 194 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 PCLOQ9Y6V0 5065 aa8.58□□□□□ -1.04
VPS28-216ENST00000533806 IGLV4-60A0A075B6I1 120 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 TRBV27A0A0K0K1C4 114 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 CDK2AP2O75956 126 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 ANGP03950 147 aaKnown RBP8.57□□□□□ -1.04
VPS28-216ENST00000533806 AMTP48728 403 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 CAMPP49913 170 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 MRPL51Q4U2R6 128 aaKnown RBP8.57□□□□□ -1.04
VPS28-216ENST00000533806 KRTAP26-1Q6PEX3 210 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 ANAPC16Q96DE5 110 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 RMI2Q96E14 147 aa8.57□□□□□ -1.04
VPS28-216ENST00000533806 IGKV2D-24A0A075B6R9 120 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 SMKR1H3BMG3 65 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 I3L3M4 83 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 TSHBP01222 138 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 MT-ND4LP03901 98 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 HBBP68871 147 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 MRPL54Q6P161 138 aaKnown RBP8.56□□□□□ -1.04
VPS28-216ENST00000533806 LINC00269Q8N2A0 174 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 ST20Q9HBF5 79 aa8.56□□□□□ -1.04
VPS28-216ENST00000533806 TRBV24-1A0A075B6N3 115 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 LINC00862A6NCI5 91 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 H7C423 109 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 ESDP10768 282 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 MIAQ16674 131 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 ATP5L2Q7Z4Y8 100 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 NTN5Q8WTR8 489 aaPredicted RBP8.55□□□□□ -1.04
VPS28-216ENST00000533806 BAALCQ8WXS3 180 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 KRTAP17-1Q9BYP8 105 aa8.55□□□□□ -1.04
VPS28-216ENST00000533806 PPP1R17O96001 155 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 S100A8P05109 93 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 PMCHP20382 165 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 REG3AQ06141 175 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 C10orf91Q5T1B1 145 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 C1orf43Q9BWL3 253 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 SEC11CQ9BY50 192 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 DNAH8Q96JB1 4490 aa8.54□□□□□ -1.04
VPS28-216ENST00000533806 ABCA13Q86UQ4 5058 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 VCYO14598 125 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 LECT2O14960 151 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 CRPP02741 224 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 APCSP02743 223 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 KRTAP10-1P60331 282 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 SUMO2P61956 95 aaKnown RBP8.53□□□□□ -1.04
VPS28-216ENST00000533806 RPL32P62910 135 aaKnown RBP8.53□□□□□ -1.04
VPS28-216ENST00000533806 COMMD7Q86VX2 200 aa8.53□□□□□ -1.04
VPS28-216ENST00000533806 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.52□□□□□ -1.05
VPS28-216ENST00000533806 IGKV2-29A2NJV5 120 aaPredicted RBP8.52□□□□□ -1.05
VPS28-216ENST00000533806 F8W036 122 aa8.52□□□□□ -1.05
VPS28-216ENST00000533806 CLPSL2Q6UWE3 100 aa8.52□□□□□ -1.05
VPS28-216ENST00000533806 IMMP2LQ96T52 175 aa8.52□□□□□ -1.05
VPS28-216ENST00000533806 C20orf78Q9BR46 151 aa8.52□□□□□ -1.05
VPS28-216ENST00000533806 TMEM242Q9NWH2 141 aa8.52□□□□□ -1.05
VPS28-216ENST00000533806 TRAV8-4A0A0B4J246 113 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 UBE2L6O14933 153 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 TNFRSF6BO95407 300 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 PPBPP02775 128 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 FGF6P10767 208 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 GCSHP23434 173 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 CKS2P33552 79 aa8.51□□□□□ -1.05
VPS28-216ENST00000533806 MRPL52Q86TS9 123 aaKnown RBP8.51□□□□□ -1.05
VPS28-216ENST00000533806 IGLV5-52A0A0A0MRZ9 124 aa8.5□□□□□ -1.05
VPS28-216ENST00000533806 D6R8Y8 96 aa8.5□□□□□ -1.05
VPS28-216ENST00000533806 PHOX2AO14813 284 aa8.5□□□□□ -1.05
VPS28-216ENST00000533806 BTF3L4Q96K17 158 aa8.5□□□□□ -1.05
VPS28-216ENST00000533806 CTDSP1Q9GZU7 261 aa8.5□□□□□ -1.05
VPS28-216ENST00000533806 CARHSP1Q9Y2V2 147 aaKnown RBP8.5□□□□□ -1.05
VPS28-216ENST00000533806 NPYP01303 97 aa8.49□□□□□ -1.05
VPS28-216ENST00000533806 ZNF25P17030 456 aaPredicted RBP8.49□□□□□ -1.05
VPS28-216ENST00000533806 XGP55808 180 aa8.49□□□□□ -1.05
VPS28-216ENST00000533806 PRSS47A8MTI9 375 aa8.48□□□□□ -1.05
VPS28-216ENST00000533806 AMMECR1LQ6DCA0 310 aa8.48□□□□□ -1.05
VPS28-216ENST00000533806 KIR2DL4Q99706 377 aa8.48□□□□□ -1.05
VPS28-216ENST00000533806 IGLV10-54A0A075B6I4 117 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 C7orf77A4D0Y5 90 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 USP17L23D6RBM5 183 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 RNASEKQ6P5S7 137 aaKnown RBP8.47□□□□□ -1.05
VPS28-216ENST00000533806 TMEM136Q6ZRR5 245 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 ORMDL3Q8N138 153 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 SMIM2Q9BVW6 85 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 CDC42SE2Q9NRR3 84 aa8.47□□□□□ -1.05
VPS28-216ENST00000533806 CSDC2Q9Y534 153 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms