RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 FABP9Q0Z7S8 132 aa10.61□□□□□ -0.71
CHMP4A-207ENST00000533523 UFSP1Q6NVU6 142 aa10.61□□□□□ -0.71
CHMP4A-207ENST00000533523 ZFP2Q6ZN57 461 aa10.61□□□□□ -0.71
CHMP4A-207ENST00000533523 Q6ZSN1 163 aa10.61□□□□□ -0.71
CHMP4A-207ENST00000533523 IGLV5-52A0A0A0MRZ9 124 aa10.6□□□□□ -0.71
CHMP4A-207ENST00000533523 IGHV3-73A0A0B4J1V6 119 aa10.6□□□□□ -0.71
CHMP4A-207ENST00000533523 PSCAO43653 123 aa10.6□□□□□ -0.71
CHMP4A-207ENST00000533523 RAB4AP20338 218 aa10.6□□□□□ -0.71
CHMP4A-207ENST00000533523 MRPL51Q4U2R6 128 aaKnown RBP10.6□□□□□ -0.71
CHMP4A-207ENST00000533523 PKHD1L1Q86WI1 4243 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 K7EP13 123 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 TRGC2P03986 189 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 TIRAPP58753 221 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 ZNF56Q15929 161 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 KIAA1644Q3SXP7 199 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 C10orf126Q8N4M7 172 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 SLC25A29Q8N8R3 303 aa10.59□□□□□ -0.71
CHMP4A-207ENST00000533523 F5H697 171 aa10.58□□□□□ -0.72
CHMP4A-207ENST00000533523 TRAV26-2A0A0B4J265 109 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 LOC100131303A0A0U1RQF7 123 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 SMKR1H3BMG3 65 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 NCR2O95944 276 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 SUMO4Q6EEV6 95 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 MRAP2Q96G30 205 aa10.57□□□□□ -0.72
CHMP4A-207ENST00000533523 D6R8Y8 96 aa10.56□□□□□ -0.72
CHMP4A-207ENST00000533523 J3QL48 77 aa10.56□□□□□ -0.72
CHMP4A-207ENST00000533523 PHOX2AO14813 284 aa10.56□□□□□ -0.72
CHMP4A-207ENST00000533523 CKS2P33552 79 aa10.56□□□□□ -0.72
CHMP4A-207ENST00000533523 TMEM70Q9BUB7 260 aa10.56□□□□□ -0.72
CHMP4A-207ENST00000533523 GAS8-AS1O95177 125 aa10.55□□□□□ -0.72
CHMP4A-207ENST00000533523 ORMDL3Q8N138 153 aa10.55□□□□□ -0.72
CHMP4A-207ENST00000533523 NTN5Q8WTR8 489 aaPredicted RBP10.55□□□□□ -0.72
CHMP4A-207ENST00000533523 Q9HAA7 133 aa10.55□□□□□ -0.72
CHMP4A-207ENST00000533523 TRAV8-6A0A0B4J262 113 aa10.54□□□□□ -0.72
CHMP4A-207ENST00000533523 PPBPP02775 128 aa10.54□□□□□ -0.72
CHMP4A-207ENST00000533523 PRELID3AQ96N28 172 aa10.54□□□□□ -0.72
CHMP4A-207ENST00000533523 RNF213Q63HN8 5207 aa10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 IGHV3-38A0A0C4DH36 116 aa10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 M0QY20 66 aa10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 ATP6V0E2Q8NHE4 81 aa10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 RPL39LQ96EH5 51 aaKnown RBP10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 ALKBH7Q9BT30 221 aaPredicted RBP10.53□□□□□ -0.72
CHMP4A-207ENST00000533523 LRCOL1A6NCL2 159 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 C1orf196B1AJZ1 125 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 H7C1H1 209 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 NPYP01303 97 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 NRACQ8N912 160 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 GTSF1LQ9H1H1 148 aa10.52□□□□□ -0.73
CHMP4A-207ENST00000533523 GAGE12JA6NER3 117 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 LINC00694P0DN24 101 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 GAGE1Q13065 139 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 GAGE4Q13068 117 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 GAGE5Q13069 117 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 GAGE13Q4V321 117 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 LINC01556Q5JQF7 62 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 OR10J3Q5JRS4 329 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 LELP1Q5T871 98 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 Q8N814 137 aa10.51□□□□□ -0.73
CHMP4A-207ENST00000533523 TNFRSF6BO95407 300 aa10.5□□□□□ -0.73
CHMP4A-207ENST00000533523 PPP1R17O96001 155 aa10.5□□□□□ -0.73
CHMP4A-207ENST00000533523 Q9UF83 564 aa10.5□□□□□ -0.73
CHMP4A-207ENST00000533523 LAMTOR2Q9Y2Q5 125 aa10.5□□□□□ -0.73
CHMP4A-207ENST00000533523 TRBV10-1A0A0K0K1A3 114 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 IGHV3-30P01768 117 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 IGHV3-33P01772 117 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 IGHV3-30-3P0DP02 117 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 IGHV3-30-5P0DP03 117 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 NEXN-AS1Q8NBZ9 246 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 NIT2Q9NQR4 276 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 FAM30AQ9NZY2 134 aa10.49□□□□□ -0.73
CHMP4A-207ENST00000533523 TRBV6-5A0A0K0K1A5 114 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 IBA57-AS1B1ANH7 110 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BKO60814 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BJP06899 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BOP23527 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BBP33778 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BDP58876 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 RAB5BP61020 215 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BCP62807 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST2H2BEQ16778 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 IQCJQ1A5X6 159 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BHQ93079 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BNQ99877 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 HIST1H2BMQ99879 126 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 ST20Q9HBF5 79 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 LRP2P98164 4655 aa10.48□□□□□ -0.73
CHMP4A-207ENST00000533523 RPL36AP83881 106 aaKnown RBP10.47□□□□□ -0.73
CHMP4A-207ENST00000533523 C18orf32Q8TCD1 76 aa10.47□□□□□ -0.73
CHMP4A-207ENST00000533523 RPL36ALQ969Q0 106 aaKnown RBP10.47□□□□□ -0.73
CHMP4A-207ENST00000533523 DNAJC30Q96LL9 226 aa10.47□□□□□ -0.73
CHMP4A-207ENST00000533523 MAP1LC3AQ9H492 121 aa10.47□□□□□ -0.73
CHMP4A-207ENST00000533523 LOC389332A0A1B0GUA5 103 aa10.46□□□□□ -0.73
CHMP4A-207ENST00000533523 PLA2G1BP04054 148 aaKnown RBP10.46□□□□□ -0.73
CHMP4A-207ENST00000533523 SUMO2P61956 95 aaKnown RBP10.46□□□□□ -0.73
CHMP4A-207ENST00000533523 C20orf78Q9BR46 151 aa10.46□□□□□ -0.73
CHMP4A-207ENST00000533523 LINC00528Q8N1L1 170 aa10.45□□□□□ -0.74
CHMP4A-207ENST00000533523 TRBV7-3A0A075B6L6 115 aa10.44□□□□□ -0.74
CHMP4A-207ENST00000533523 SDHAF1A6NFY7 115 aa10.44□□□□□ -0.74
CHMP4A-207ENST00000533523 PRSS47A8MTI9 375 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms