RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ELOBQ15370 118 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 MRPL51Q4U2R6 128 aaKnown RBP1.73□□□□□ -2.13
CD44-235ENST00000532339 MNS1Q8NEH6 495 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 OR8J3Q8NGG0 315 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 OR51A4Q8NGJ6 313 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 DCSTAMPQ9H295 470 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 MAP1LC3AQ9H492 121 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 HRASLSQ9HDD0 168 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 LINC00474Q9P2X8 69 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 SPRR2DP22532 72 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 ZNF93P35789 620 aaPredicted RBP1.72□□□□□ -2.13
CD44-235ENST00000532339 AKR1C2P52895 323 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 RHOBP62745 196 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 FABP5Q01469 135 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 PPP1R1AQ13522 171 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 FAM229BQ4G0N7 80 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 OR1L8Q8NGR8 309 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 Q8WTZ3 238 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 NDUFA4L2Q9NRX3 87 aa1.72□□□□□ -2.13
CD44-235ENST00000532339 RBM7Q9Y580 266 aaKnown RBP1.72□□□□□ -2.13
CD44-235ENST00000532339 LINC00862A6NCI5 91 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 OR4C45A6NMZ5 311 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 RPSAP08865 295 aaKnown RBP1.71□□□□□ -2.14
CD44-235ENST00000532339 OR10J1P30954 320 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 TCL1AP56279 114 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 TSPEAR-AS2P59090 65 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 RPL30P62888 115 aaKnown RBP1.71□□□□□ -2.14
CD44-235ENST00000532339 JOSD1Q15040 202 aaPredicted RBP1.71□□□□□ -2.14
CD44-235ENST00000532339 TEX47Q8TBZ9 253 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 TSKUQ8WUA8 353 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 PARD6GQ9BYG4 376 aaPredicted RBP1.71□□□□□ -2.14
CD44-235ENST00000532339 C11orf1Q9H5F2 150 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 FGFR1OP2Q9NVK5 253 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 MRPL16Q9NX20 251 aaKnown RBP1.71□□□□□ -2.14
CD44-235ENST00000532339 ALG5Q9Y673 324 aa1.71□□□□□ -2.14
CD44-235ENST00000532339 TRAV30A0A087WSZ9 112 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 A0A096LNI7 61 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 TRBV6-7A0A0A0MS04 114 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 C19orf71A6NCJ1 209 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 HMGN1P05114 100 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 SFTA3P0C7M3 94 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 RPL12P30050 165 aaKnown RBP1.7□□□□□ -2.14
CD44-235ENST00000532339 POLR2GP62487 172 aaKnown RBP eCLIP1.7□□□□□ -2.14
CD44-235ENST00000532339 HIST1H1AQ02539 215 aaPredicted RBP1.7□□□□□ -2.14
CD44-235ENST00000532339 PCOTHQ58A44 107 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 COQ5Q5HYK3 327 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 C1orf194Q5T5A4 169 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 C10orf67Q8IYJ2 551 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 OR4X1Q8NH49 305 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 OR10J5Q8NHC4 309 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 SMDT1Q9H4I9 107 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 BANF2Q9H503 90 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 TMEM138Q9NPI0 162 aa1.7□□□□□ -2.14
CD44-235ENST00000532339 A0A087WWC5 75 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 M0R381 172 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 CRPP02741 224 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 ESDP10768 282 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 KRTAP12-3P60328 96 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 YPEL3P61236 119 aaPredicted RBP1.69□□□□□ -2.14
CD44-235ENST00000532339 MAGOHP61326 146 aaKnown RBP1.69□□□□□ -2.14
CD44-235ENST00000532339 EIF5AP63241 154 aaKnown RBP1.69□□□□□ -2.14
CD44-235ENST00000532339 RASL11AQ6T310 242 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 GLIPR1L1Q6UWM5 242 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 ENHOQ6UWT2 76 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 C6orf201Q7Z4U5 140 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 PTH2Q96A98 100 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 TAS2R4Q9NYW5 299 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 GNG8Q9UK08 70 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 PKIGQ9Y2B9 76 aa1.69□□□□□ -2.14
CD44-235ENST00000532339 MUC5BQ9HC84 5762 aaPredicted RBP1.68□□□□□ -2.14
CD44-235ENST00000532339 A0A087WX48 190 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 SDHAF1A6NFY7 115 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 G3V3Q6 166 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 FXYD1O00168 92 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 CORTO00230 105 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 CRTAPO75718 401 aaPredicted RBP1.68□□□□□ -2.14
CD44-235ENST00000532339 DDTP30046 118 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 PPP3R1P63098 170 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 SUPT4H1P63272 117 aaKnown RBP1.68□□□□□ -2.14
CD44-235ENST00000532339 MIAQ16674 131 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 COMMD7Q86VX2 200 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 DAND5Q8N907 189 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 OR2D3Q8NGH3 330 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 SPRR2FQ96RM1 72 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 PRADC1Q9BSG0 188 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 TMEM109Q9BVC6 243 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 PECRQ9BY49 303 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 NKX6-2Q9C056 277 aaPredicted RBP1.68□□□□□ -2.14
CD44-235ENST00000532339 TMEM222Q9H0R3 208 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 MIXL1Q9H2W2 232 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 C8orf4Q9NR00 106 aa1.68□□□□□ -2.14
CD44-235ENST00000532339 MRPL36Q9P0J6 103 aaKnown RBP1.68□□□□□ -2.14
CD44-235ENST00000532339 IGHV3-73A0A0B4J1V6 119 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 TRAV4A0A0B4J268 109 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 TRAV12-3A0A0B4J271 114 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 ZNF73O43830 326 aaPredicted RBP1.67□□□□□ -2.14
CD44-235ENST00000532339 IGLC1P0CG04 106 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 ATP6V0CP27449 155 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 LPAR6P43657 344 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 TAS2R45P59539 299 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms