RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 LINC01556Q5JQF7 62 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 PRELID3AQ96N28 172 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 SMCO4Q9NRQ5 59 aa9.51□□□□□ -0.89
USF1-209ENST00000529476 KMT2AQ03164 3969 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 HECTD4Q9Y4D8 3996 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 TRBV25-1A0A075B6N4 114 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 IGHV1-24A0A0C4DH33 117 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 APCSP02743 223 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 KIAA1644Q3SXP7 199 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 COX19Q49B96 90 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 TTC32Q5I0X7 151 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 NIT1Q86X76 327 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 C20orf78Q9BR46 151 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 CHCHD5Q9BSY4 110 aa9.5□□□□□ -0.89
USF1-209ENST00000529476 ABCA13Q86UQ4 5058 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 TRBV27A0A0K0K1C4 114 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 VCYO14598 125 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 PHOX2AO14813 284 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 TSHBP01222 138 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 AMTP48728 403 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 TMEM243Q9BU79 118 aa9.49□□□□□ -0.89
USF1-209ENST00000529476 TMEM262E9PQX1 116 aa9.48□□□□□ -0.89
USF1-209ENST00000529476 MT-ND6P03923 174 aa9.48□□□□□ -0.89
USF1-209ENST00000529476 GAGE6Q13070 117 aa9.48□□□□□ -0.89
USF1-209ENST00000529476 MRPL18Q9H0U6 180 aaKnown RBP9.48□□□□□ -0.89
USF1-209ENST00000529476 DNAH6Q9C0G6 4158 aa9.48□□□□□ -0.89
USF1-209ENST00000529476 TRAV9-2A0A087WT02 112 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 RPL32P62910 135 aaKnown RBP9.47□□□□□ -0.89
USF1-209ENST00000529476 FABP9Q0Z7S8 132 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 CHCHD7Q9BUK0 85 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 SMIM2Q9BVW6 85 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 LAMTOR2Q9Y2Q5 125 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 TRAPPC1Q9Y5R8 145 aa9.47□□□□□ -0.89
USF1-209ENST00000529476 A0A087WX48 190 aa9.46□□□□□ -0.9
USF1-209ENST00000529476 SCO1O75880 301 aa9.46□□□□□ -0.9
USF1-209ENST00000529476 MPV17L2Q567V2 206 aa9.46□□□□□ -0.9
USF1-209ENST00000529476 C10orf126Q8N4M7 172 aa9.46□□□□□ -0.9
USF1-209ENST00000529476 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.45□□□□□ -0.9
USF1-209ENST00000529476 LOC389332A0A1B0GUA5 103 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 IGKV2-29A2NJV5 120 aaPredicted RBP9.45□□□□□ -0.9
USF1-209ENST00000529476 K7EP13 123 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 FCER1GP30273 86 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 C1orf134Q5TEV5 83 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 Q8N976 141 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 KIR2DL4Q99706 377 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 MAP1LC3AQ9H492 121 aa9.45□□□□□ -0.9
USF1-209ENST00000529476 PRSS47A8MTI9 375 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 IBA57-AS1B1ANH7 110 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 UBE2L6O14933 153 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 ESDP10768 282 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 PKIAP61925 76 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 RBX1P62877 108 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 C6orf223Q8N319 242 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 ALKBH7Q9BT30 221 aaPredicted RBP9.44□□□□□ -0.9
USF1-209ENST00000529476 KLK12Q9UKR0 248 aa9.44□□□□□ -0.9
USF1-209ENST00000529476 TCAPO15273 167 aa9.43□□□□□ -0.9
USF1-209ENST00000529476 ATP6V1G1O75348 118 aa9.43□□□□□ -0.9
USF1-209ENST00000529476 RTL8CO15255 209 aa9.42□□□□□ -0.9
USF1-209ENST00000529476 Q8N8P6 123 aa9.42□□□□□ -0.9
USF1-209ENST00000529476 IGLV4-60A0A075B6I1 120 aa9.41□□□□□ -0.9
USF1-209ENST00000529476 COLCA2A8K830 154 aa9.41□□□□□ -0.9
USF1-209ENST00000529476 H7C423 109 aa9.41□□□□□ -0.9
USF1-209ENST00000529476 ANGP03950 147 aaKnown RBP9.41□□□□□ -0.9
USF1-209ENST00000529476 FGF6P10767 208 aa9.41□□□□□ -0.9
USF1-209ENST00000529476 Q9HAA7 133 aa9.41□□□□□ -0.9
USF1-209ENST00000529476 A0A1B0GUV1 79 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 BTF3P20290 206 aaKnown RBP9.4□□□□□ -0.9
USF1-209ENST00000529476 RAB5AP20339 215 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 S100A1P23297 94 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 IFI27P40305 119 aaPredicted RBP9.4□□□□□ -0.9
USF1-209ENST00000529476 LAGE3Q14657 143 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 AMMECR1LQ6DCA0 310 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 RNASEKQ6P5S7 137 aaKnown RBP9.4□□□□□ -0.9
USF1-209ENST00000529476 C20orf203Q8NBC4 194 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 UBE2WQ96B02 151 aa9.4□□□□□ -0.9
USF1-209ENST00000529476 NXT2Q9NPJ8 142 aaKnown RBP9.4□□□□□ -0.9
USF1-209ENST00000529476 CLPSL2Q6UWE3 100 aa9.39□□□□□ -0.91
USF1-209ENST00000529476 ENHOQ6UWT2 76 aa9.39□□□□□ -0.91
USF1-209ENST00000529476 Q6ZRN7 208 aaPredicted RBP9.39□□□□□ -0.91
USF1-209ENST00000529476 LINC00269Q8N2A0 174 aa9.39□□□□□ -0.91
USF1-209ENST00000529476 KRTAP4-5Q9BYR2 181 aa9.39□□□□□ -0.91
USF1-209ENST00000529476 RPL39P62891 51 aaKnown RBP9.38□□□□□ -0.91
USF1-209ENST00000529476 NFE4Q86UQ8 179 aa9.38□□□□□ -0.91
USF1-209ENST00000529476 PRSS3P2Q8NHM4 247 aa9.38□□□□□ -0.91
USF1-209ENST00000529476 DNAH2Q9P225 4427 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 TRAV8-3A0A0A6YYJ7 113 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 CRPP02741 224 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 ZNF25P17030 456 aaPredicted RBP9.37□□□□□ -0.91
USF1-209ENST00000529476 MRPL52Q86TS9 123 aaKnown RBP9.37□□□□□ -0.91
USF1-209ENST00000529476 C18orf32Q8TCD1 76 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 TMEM18Q96B42 140 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 PRR34Q9NV39 138 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 UBE2D4Q9Y2X8 147 aa9.37□□□□□ -0.91
USF1-209ENST00000529476 TRGC2P03986 189 aa9.36□□□□□ -0.91
USF1-209ENST00000529476 REG3AQ06141 175 aa9.36□□□□□ -0.91
USF1-209ENST00000529476 Q0VG73 95 aa9.36□□□□□ -0.91
USF1-209ENST00000529476 OR5A1Q8NGJ0 315 aa9.36□□□□□ -0.91
USF1-209ENST00000529476 TMEM101Q96IK0 257 aa9.36□□□□□ -0.91
USF1-209ENST00000529476 DYNC1H1Q14204 4646 aaKnown RBP9.35□□□□□ -0.91
USF1-209ENST00000529476 PRSS29PA6NIE9 313 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms