RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NOTCH4Q99466 2003 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 IGHV4OR15-8A0A075B7B6 117 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 A0A087WW49 117 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 IGHV1-18A0A0C4DH31 117 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 CYSRT1A8MQ03 144 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 LYRM9A8MSI8 78 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 DAD1P61803 113 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 ESRGQ1W209 222 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 ADAMTSL4-AS1Q5T5F5 129 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 RUSC1-AS1Q66K80 236 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 Q6ZSN1 163 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 Q8NA96 180 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 DYNLRB2Q8TF09 96 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 RPL39LQ96EH5 51 aaKnown RBP4.26□□□□□ -1.73
CD44-225ENST00000527326 MRPL53Q96EL3 112 aaKnown RBP4.26□□□□□ -1.73
CD44-225ENST00000527326 CCL13Q99616 98 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 NDUFA12Q9UI09 145 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 MAST4O15021 2626 aa4.26□□□□□ -1.73
CD44-225ENST00000527326 GCN1Q92616 2671 aaKnown RBP4.26□□□□□ -1.73
CD44-225ENST00000527326 TRAV23DV6A0A075B6W5 121 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 IGHV3-64DA0A0J9YX35 117 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 IGHV5-10-1A0A0J9YXX1 117 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 C10orf142B7Z368 130 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 MGPP08493 103 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 POLR2KP53803 58 aaKnown RBP4.25□□□□□ -1.73
CD44-225ENST00000527326 ADORA2A-AS1P86434 159 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 IGFL4Q6B9Z1 124 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 DGAT2L7PQ6IED9 249 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 VMO1Q7Z5L0 202 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 C11orf44Q8N8P7 122 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 SMG1Q96Q15 3661 aaKnown RBP4.25□□□□□ -1.73
CD44-225ENST00000527326 C11orf68Q9H3H3 251 aaKnown RBP4.25□□□□□ -1.73
CD44-225ENST00000527326 LENEPQ9Y5L5 61 aa4.25□□□□□ -1.73
CD44-225ENST00000527326 ESPL1Q14674 2120 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 IGHV3-21A0A0B4J1V1 117 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 TRBV6-5A0A0K0K1A5 114 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 M0R1B8 84 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 ERC2-IT1O76042 136 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 LHBP01229 141 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 IGLV3-19P01714 112 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 MRGPRG-AS1Q2M3A8 158 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 GPHB5Q86YW7 130 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 Q8N2B8 174 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 TM2D3Q9BRN9 247 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 C14orf132Q9NPU4 83 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 SPRR3Q9UBC9 169 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 FRYQ5TBA9 3013 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 SPEGQ15772 3267 aa4.24□□□□□ -1.73
CD44-225ENST00000527326 KNTC1P50748 2209 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 IGHV3-64A0A075B6Q5 118 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 TEX22C9J3V5 150 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 F5H697 171 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 JMJD7-PLA2G4BH0Y9G9 81 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 H0YGX0 51 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 NDUFA1O15239 70 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 NDUFS5O43920 106 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 MIFP14174 115 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 RNASE4P34096 147 aaKnown RBP4.23□□□□□ -1.73
CD44-225ENST00000527326 Q6ZSV7 163 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 ZNRF1Q8ND25 227 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 MPLKIPQ8TAP9 179 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 LINC00308Q8TCZ7 52 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 RMI2Q96E14 147 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 UBL5Q9BZL1 73 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 C11orf21Q9P2W6 132 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 Q9UF83 564 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 NAV2Q8IVL1 2488 aa4.23□□□□□ -1.73
CD44-225ENST00000527326 A0A0J9YXV3 536 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 K7EIM0 57 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 S100A4P26447 101 aaKnown RBP4.22□□□□□ -1.73
CD44-225ENST00000527326 RPL39P62891 51 aaKnown RBP4.22□□□□□ -1.73
CD44-225ENST00000527326 Q1T7F1 81 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 C15orf32Q32M92 178 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 LY6G5BQ8NDX9 201 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 RBM12B-AS1Q9P1G2 102 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 PHLDA3Q9Y5J5 127 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 DSCAMO60469 2012 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 RTTNQ86VV8 2226 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 ZZEF1O43149 2961 aa4.22□□□□□ -1.73
CD44-225ENST00000527326 WDFY3Q8IZQ1 3526 aa4.21□□□□□ -1.73
CD44-225ENST00000527326 TRAV21A0A0B4J279 112 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 BUB1B-PAK6H3BSN5 160 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 FOLR3P41439 243 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 MAGEA5P43359 124 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 UBE2BP63146 152 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 HIST2H2BCQ6DN03 193 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 HIST2H2BDQ6DRA6 164 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 CD164L2Q6UWJ8 174 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 ENHOQ6UWT2 76 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 C9orf47Q6ZRZ4 202 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 FAM218AQ96MZ4 157 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 GAFA1Q96PS6 74 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 RNF5Q99942 180 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 HES7Q9BYE0 225 aa4.21□□□□□ -1.74
CD44-225ENST00000527326 RP1P56715 2156 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 F5P12259 2224 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 IGLV4-3A0A075B6K6 122 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 E7EQL1 145 aa4.2□□□□□ -1.74
CD44-225ENST00000527326 F6UB75 175 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms