RNA–Protein interactions for RNA: ENST00000522243.5

SDCBP-209, Transcript of syndecan binding protein, humanhuman

TSL 5

Gene SDCBP, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-209ENST00000522243 GATD1Q8NB37 220 aa13.4□□□□□ -0.26
SDCBP-209ENST00000522243 PGLYRP4Q96LB8 373 aa13.4□□□□□ -0.26
SDCBP-209ENST00000522243 UBE2L6O14933 153 aa13.39□□□□□ -0.27
SDCBP-209ENST00000522243 GATCO43716 136 aaKnown RBP13.39□□□□□ -0.27
SDCBP-209ENST00000522243 AMTP48728 403 aa13.39□□□□□ -0.27
SDCBP-209ENST00000522243 FOXA3P55318 350 aaPredicted RBP13.39□□□□□ -0.27
SDCBP-209ENST00000522243 COTL1Q14019 142 aa13.39□□□□□ -0.27
SDCBP-209ENST00000522243 A0A1B0GUV1 79 aa13.38□□□□□ -0.27
SDCBP-209ENST00000522243 TMEM250H0YL14 139 aa13.38□□□□□ -0.27
SDCBP-209ENST00000522243 RPL39LQ96EH5 51 aaKnown RBP13.38□□□□□ -0.27
SDCBP-209ENST00000522243 SRRM2Q9UQ35 2752 aaKnown RBP13.38□□□□□ -0.27
SDCBP-209ENST00000522243 J3QL48 77 aa13.37□□□□□ -0.27
SDCBP-209ENST00000522243 DGAT2L7PQ6IED9 249 aa13.37□□□□□ -0.27
SDCBP-209ENST00000522243 C9orf163Q8N9P6 203 aa13.36□□□□□ -0.27
SDCBP-209ENST00000522243 LYPD6BQ8NI32 183 aa13.36□□□□□ -0.27
SDCBP-209ENST00000522243 TRAV8-4A0A0B4J246 113 aa13.35□□□□□ -0.27
SDCBP-209ENST00000522243 SMIM15Q7Z3B0 74 aa13.35□□□□□ -0.27
SDCBP-209ENST00000522243 IGKV3OR2-268A0A0C4DH90 116 aa13.34□□□□□ -0.27
SDCBP-209ENST00000522243 KRTAP10-4P60372 401 aaPredicted RBP13.34□□□□□ -0.27
SDCBP-209ENST00000522243 FAM231DQ6ZW35 169 aa13.34□□□□□ -0.27
SDCBP-209ENST00000522243 DMBT1Q9UGM3 2413 aaPredicted RBP13.33□□□□□ -0.27
SDCBP-209ENST00000522243 hDV102S1A0JD36 115 aa13.33□□□□□ -0.28
SDCBP-209ENST00000522243 A8MWL6 223 aa13.33□□□□□ -0.28
SDCBP-209ENST00000522243 CLRN3Q8NCR9 226 aa13.33□□□□□ -0.28
SDCBP-209ENST00000522243 EIF5A2Q9GZV4 153 aaKnown RBP13.33□□□□□ -0.28
SDCBP-209ENST00000522243 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.33□□□□□ -0.28
SDCBP-209ENST00000522243 MYCBP2O75592 4640 aa13.31□□□□□ -0.28
SDCBP-209ENST00000522243 PANO1I0J062 215 aa13.31□□□□□ -0.28
SDCBP-209ENST00000522243 HERC1Q15751 4861 aa13.3□□□□□ -0.28
SDCBP-209ENST00000522243 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.3□□□□□ -0.28
SDCBP-209ENST00000522243 IGKV2-29A2NJV5 120 aaPredicted RBP13.3□□□□□ -0.28
SDCBP-209ENST00000522243 AMMECR1LQ6DCA0 310 aa13.3□□□□□ -0.28
SDCBP-209ENST00000522243 SDIM1Q6ZPB5 146 aa13.3□□□□□ -0.28
SDCBP-209ENST00000522243 SMIM7Q9BQ49 75 aa13.3□□□□□ -0.28
SDCBP-209ENST00000522243 GAGE12HA6NDE8 117 aa13.29□□□□□ -0.28
SDCBP-209ENST00000522243 SDHAF1A6NFY7 115 aa13.29□□□□□ -0.28
SDCBP-209ENST00000522243 KRTAP29-1A8MX34 341 aaPredicted RBP13.29□□□□□ -0.28
SDCBP-209ENST00000522243 RNASEKQ6P5S7 137 aaKnown RBP13.29□□□□□ -0.28
SDCBP-209ENST00000522243 GAS8-AS1O95177 125 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 APCSP02743 223 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 SLPIP03973 132 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 CT83Q5H943 113 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 TEX261Q6UWH6 196 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 LINC01551Q86U37 167 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 BORCS7Q96B45 105 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 AP5S1Q9NUS5 200 aa13.28□□□□□ -0.28
SDCBP-209ENST00000522243 ZNF727A8MUV8 499 aa13.27□□□□□ -0.29
SDCBP-209ENST00000522243 NCR2O95944 276 aa13.27□□□□□ -0.29
SDCBP-209ENST00000522243 SRP19P09132 144 aaKnown RBP13.27□□□□□ -0.29
SDCBP-209ENST00000522243 PMCHP20382 165 aa13.27□□□□□ -0.29
SDCBP-209ENST00000522243 RPL37AP61513 92 aaKnown RBP13.27□□□□□ -0.29
SDCBP-209ENST00000522243 CNBPP62633 177 aaKnown RBP13.27□□□□□ -0.29
SDCBP-209ENST00000522243 FAM210AQ96ND0 272 aa13.27□□□□□ -0.29
SDCBP-209ENST00000522243 HIGD1CA8MV81 97 aa13.26□□□□□ -0.29
SDCBP-209ENST00000522243 FGF6P10767 208 aa13.26□□□□□ -0.29
SDCBP-209ENST00000522243 I3L3M4 83 aa13.25□□□□□ -0.29
SDCBP-209ENST00000522243 TSKUQ8WUA8 353 aa13.25□□□□□ -0.29
SDCBP-209ENST00000522243 A0A1B0GUT8 65 aa13.24□□□□□ -0.29
SDCBP-209ENST00000522243 A0A1B0GVG6 124 aa13.24□□□□□ -0.29
SDCBP-209ENST00000522243 FAM231BA6NCW3 169 aa13.24□□□□□ -0.29
SDCBP-209ENST00000522243 C15orf56Q8N910 161 aa13.24□□□□□ -0.29
SDCBP-209ENST00000522243 OSTCQ9NRP0 149 aa13.24□□□□□ -0.29
SDCBP-209ENST00000522243 IGHV3-64A0A075B6Q5 118 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.23□□□□□ -0.29
SDCBP-209ENST00000522243 TRBV6-5A0A0K0K1A5 114 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 H7C423 109 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 CHTF8P0CG12 524 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 HIGD2BQ4VC39 106 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 CHCHD10Q8WYQ3 142 aaPredicted RBP13.23□□□□□ -0.29
SDCBP-209ENST00000522243 DPH3Q96FX2 82 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 RNF185Q96GF1 192 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 ST20Q9HBF5 79 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 TMEM242Q9NWH2 141 aa13.23□□□□□ -0.29
SDCBP-209ENST00000522243 NDUFS6O75380 124 aaKnown RBP13.22□□□□□ -0.29
SDCBP-209ENST00000522243 RPS10P46783 165 aaKnown RBP13.22□□□□□ -0.29
SDCBP-209ENST00000522243 AMN1Q8IY45 258 aa13.22□□□□□ -0.29
SDCBP-209ENST00000522243 TMEM191AQ9H0A3 160 aa13.22□□□□□ -0.29
SDCBP-209ENST00000522243 TSHBP01222 138 aa13.21□□□□□ -0.29
SDCBP-209ENST00000522243 RAB4AP20338 218 aa13.21□□□□□ -0.29
SDCBP-209ENST00000522243 HNRNPA3P51991 378 aaKnown RBP13.21□□□□□ -0.29
SDCBP-209ENST00000522243 CFAP161Q6P656 301 aa13.21□□□□□ -0.29
SDCBP-209ENST00000522243 BTF3L4Q96K17 158 aa13.2□□□□□ -0.3
SDCBP-209ENST00000522243 V9GYV3 84 aa13.2□□□□□ -0.3
SDCBP-209ENST00000522243 SMKR1H3BMG3 65 aa13.19□□□□□ -0.3
SDCBP-209ENST00000522243 ESDP10768 282 aa13.19□□□□□ -0.3
SDCBP-209ENST00000522243 CIRBPQ14011 172 aaKnown RBP13.19□□□□□ -0.3
SDCBP-209ENST00000522243 OR5A1Q8NGJ0 315 aa13.19□□□□□ -0.3
SDCBP-209ENST00000522243 ZNF25P17030 456 aaPredicted RBP13.18□□□□□ -0.3
SDCBP-209ENST00000522243 POLR2KP53803 58 aaKnown RBP13.18□□□□□ -0.3
SDCBP-209ENST00000522243 NUP35Q8NFH5 326 aa13.18□□□□□ -0.3
SDCBP-209ENST00000522243 ISOC2Q96AB3 205 aa13.18□□□□□ -0.3
SDCBP-209ENST00000522243 TMEM101Q96IK0 257 aa13.18□□□□□ -0.3
SDCBP-209ENST00000522243 A0A087WYN8 130 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 XCL1P47992 114 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 RPL23P62829 140 aaKnown RBP13.17□□□□□ -0.3
SDCBP-209ENST00000522243 FOXI1Q12951 378 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 RIGQ13278 110 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 TMEM241Q24JQ0 296 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 MRAP2Q96G30 205 aa13.17□□□□□ -0.3
SDCBP-209ENST00000522243 C9JQL5 133 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms