RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 TMUB2Q71RG4 321 aa9.76□□□□□ -0.85
PDLIM3-211ENST00000515261 FER1L6-AS1Q8NA97 138 aa9.76□□□□□ -0.85
PDLIM3-211ENST00000515261 SFT2D1Q8WV19 159 aa9.76□□□□□ -0.85
PDLIM3-211ENST00000515261 NIT2Q9NQR4 276 aa9.76□□□□□ -0.85
PDLIM3-211ENST00000515261 A0A096LNI7 61 aa9.75□□□□□ -0.85
PDLIM3-211ENST00000515261 A0A1B0GV50 99 aa9.75□□□□□ -0.85
PDLIM3-211ENST00000515261 CACNG7P62955 275 aa9.75□□□□□ -0.85
PDLIM3-211ENST00000515261 IGLC6P0CF74 106 aa9.74□□□□□ -0.85
PDLIM3-211ENST00000515261 CYTL1Q9NRR1 136 aa9.74□□□□□ -0.85
PDLIM3-211ENST00000515261 LINC00474Q9P2X8 69 aa9.74□□□□□ -0.85
PDLIM3-211ENST00000515261 GVQW2A0A096LPI5 108 aaPredicted RBP9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 TRGC1P0CF51 173 aa9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 RPL35P42766 123 aaKnown RBP9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 RPS20P60866 119 aaKnown RBP9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 FAM213BQ8TBF2 198 aa9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 CHCHD10Q8WYQ3 142 aaPredicted RBP9.73□□□□□ -0.85
PDLIM3-211ENST00000515261 ARPC5O15511 151 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 AMMECR1LQ6DCA0 310 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 Q6ZRP5 223 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 KCNRGQ8N5I3 272 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 OR2D3Q8NGH3 330 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 MBD3L1Q8WWY6 194 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 PKIGQ9Y2B9 76 aa9.72□□□□□ -0.85
PDLIM3-211ENST00000515261 F2Z2F3 143 aa9.71□□□□□ -0.86
PDLIM3-211ENST00000515261 SRSF9Q13242 221 aaKnown RBP eCLIP9.71□□□□□ -0.86
PDLIM3-211ENST00000515261 XKRY2A2RUG3 117 aa9.7□□□□□ -0.86
PDLIM3-211ENST00000515261 RNASEKQ6P5S7 137 aaKnown RBP9.7□□□□□ -0.86
PDLIM3-211ENST00000515261 LPAP08519 4548 aa9.7□□□□□ -0.86
PDLIM3-211ENST00000515261 UMAD1C9J7I0 102 aa9.69□□□□□ -0.86
PDLIM3-211ENST00000515261 NTF3P20783 257 aa9.69□□□□□ -0.86
PDLIM3-211ENST00000515261 G3V3Q6 166 aa9.68□□□□□ -0.86
PDLIM3-211ENST00000515261 FOXI1Q12951 378 aa9.68□□□□□ -0.86
PDLIM3-211ENST00000515261 CENPWQ5EE01 88 aa9.68□□□□□ -0.86
PDLIM3-211ENST00000515261 LYZL1Q6UWQ5 148 aa9.68□□□□□ -0.86
PDLIM3-211ENST00000515261 C19orf71A6NCJ1 209 aa9.67□□□□□ -0.86
PDLIM3-211ENST00000515261 IFNA1P01562 189 aa9.67□□□□□ -0.86
PDLIM3-211ENST00000515261 H2AFB1P0C5Y9 115 aa9.67□□□□□ -0.86
PDLIM3-211ENST00000515261 CARD19Q96LW7 228 aa9.67□□□□□ -0.86
PDLIM3-211ENST00000515261 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 IGKV2-29A2NJV5 120 aaPredicted RBP9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 H7C423 109 aa9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 XCL1P47992 114 aa9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 Q6ZNX1 250 aa9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 C11orf52Q96A22 123 aa9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 LINC00526Q96FQ7 95 aa9.66□□□□□ -0.86
PDLIM3-211ENST00000515261 IGHV1-58A0A0C4DH39 117 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 FAM231BA6NCW3 169 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 NCR2O95944 276 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 APCSP02743 223 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 FGF6P10767 208 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 TWIST1Q15672 202 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 GATD1Q8NB37 220 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 OR5A1Q8NGJ0 315 aa9.65□□□□□ -0.86
PDLIM3-211ENST00000515261 TRAV26-2A0A0B4J265 109 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 GNG4P50150 75 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 C9orf62Q8N4C0 152 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 SMIM12Q96EX1 92 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 MANBALQ9NQG1 85 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 GNG13Q9P2W3 67 aa9.64□□□□□ -0.87
PDLIM3-211ENST00000515261 RAB19A4D1S5 217 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 ZNF561-AS1K7EIQ3 104 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 CCL25O15444 150 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 ZNF25P17030 456 aaPredicted RBP9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 CCL20P78556 96 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 SYCNQ0VAF6 134 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 BTF3L4Q96K17 158 aa9.63□□□□□ -0.87
PDLIM3-211ENST00000515261 LINC00959A0A1B0GUT2 108 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 CTRLP40313 264 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 PTTG1IPP53801 180 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 GAGE2BQ13066 116 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 RPL39LQ96EH5 51 aaKnown RBP9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 TMEM101Q96IK0 257 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 BIN3Q9NQY0 253 aa9.62□□□□□ -0.87
PDLIM3-211ENST00000515261 ZNF345Q14585 488 aa9.61□□□□□ -0.87
PDLIM3-211ENST00000515261 SDHAF1A6NFY7 115 aa9.6□□□□□ -0.87
PDLIM3-211ENST00000515261 SMLR1H3BR10 107 aa9.6□□□□□ -0.87
PDLIM3-211ENST00000515261 SS18Q15532 418 aa9.6□□□□□ -0.87
PDLIM3-211ENST00000515261 ZNF664Q8N3J9 261 aa9.6□□□□□ -0.87
PDLIM3-211ENST00000515261 CNFNQ9BYD5 112 aa9.6□□□□□ -0.87
PDLIM3-211ENST00000515261 LOC107984640A0A0U1RRK4 108 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 KANTRA0A1W2PQU2 76 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 MT-ND6P03923 174 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 PMCHP20382 165 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 CAMPP49913 170 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 SMIM15Q7Z3B0 74 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 NUDT10Q8NFP7 164 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 ISOC2Q96AB3 205 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 NUDT11Q96G61 164 aa9.59□□□□□ -0.87
PDLIM3-211ENST00000515261 A0A1W2PNN7 141 aa9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 I3L3M4 83 aa9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 EIF5AP63241 154 aaKnown RBP9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 EIF5AL1Q6IS14 154 aaKnown RBP9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 TEX261Q6UWH6 196 aa9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 CD164L2Q6UWJ8 174 aa9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 PSORS1C2Q9UIG4 136 aa9.58□□□□□ -0.88
PDLIM3-211ENST00000515261 TRBV20OR9-2A0A075B6H5 130 aa9.57□□□□□ -0.88
PDLIM3-211ENST00000515261 BCL2L11O43521 198 aa9.57□□□□□ -0.88
PDLIM3-211ENST00000515261 PDE6DO43924 150 aa9.57□□□□□ -0.88
PDLIM3-211ENST00000515261 MED9Q9NWA0 146 aa9.57□□□□□ -0.88
PDLIM3-211ENST00000515261 IGLV4-69A0A075B6H9 119 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms