RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 PKIAP61925 76 aa13.85□□□□□ -0.19
USP53-208ENST00000514305 COTL1Q14019 142 aa13.85□□□□□ -0.19
USP53-208ENST00000514305 Q9UF83 564 aa13.85□□□□□ -0.19
USP53-208ENST00000514305 TGIF2-C20orf24A0A0A6YYL0 155 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 VCYO14598 125 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 TCAPO15273 167 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 Q6ZR54 194 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 RPL39LQ96EH5 51 aaKnown RBP13.84□□□□□ -0.19
USP53-208ENST00000514305 PRELID3AQ96N28 172 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 FAT2Q9NYQ8 4349 aa13.84□□□□□ -0.19
USP53-208ENST00000514305 I3L3M4 83 aa13.83□□□□□ -0.2
USP53-208ENST00000514305 NCR2O95944 276 aa13.83□□□□□ -0.2
USP53-208ENST00000514305 SUMO2P61956 95 aaKnown RBP13.83□□□□□ -0.2
USP53-208ENST00000514305 DNAH2Q9P225 4427 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 TRBV25-1A0A075B6N4 114 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 TRAV9-2A0A087WT02 112 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 TRBV6-8A0A0A6YYG3 113 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 IGHV3-38A0A0C4DH36 116 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 SMKR1H3BMG3 65 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 SIVA1O15304 175 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 TNFRSF6BO95407 300 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 FABP9Q0Z7S8 132 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 CBLN2Q8IUK8 224 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 KIR2DL4Q99706 377 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 Q9H8V8 135 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 TRAPPC1Q9Y5R8 145 aa13.82□□□□□ -0.2
USP53-208ENST00000514305 IGHV1-24A0A0C4DH33 117 aa13.81□□□□□ -0.2
USP53-208ENST00000514305 K7EP13 123 aa13.81□□□□□ -0.2
USP53-208ENST00000514305 RPL32P62910 135 aaKnown RBP13.81□□□□□ -0.2
USP53-208ENST00000514305 C1orf134Q5TEV5 83 aa13.81□□□□□ -0.2
USP53-208ENST00000514305 NRACQ8N912 160 aa13.81□□□□□ -0.2
USP53-208ENST00000514305 TMEM70Q9BUB7 260 aa13.81□□□□□ -0.2
USP53-208ENST00000514305 PKHD1P08F94 4074 aa13.8□□□□□ -0.2
USP53-208ENST00000514305 ATP6V1G1O75348 118 aa13.8□□□□□ -0.2
USP53-208ENST00000514305 MAP1LC3AQ9H492 121 aa13.8□□□□□ -0.2
USP53-208ENST00000514305 DNAH17Q9UFH2 4485 aa13.8□□□□□ -0.2
USP53-208ENST00000514305 KIAA1109Q2LD37 5005 aa13.79□□□□□ -0.2
USP53-208ENST00000514305 TRBV27A0A0K0K1C4 114 aa13.79□□□□□ -0.2
USP53-208ENST00000514305 RPS10P46783 165 aaKnown RBP13.79□□□□□ -0.2
USP53-208ENST00000514305 POLR2KP53803 58 aaKnown RBP13.79□□□□□ -0.2
USP53-208ENST00000514305 TTC32Q5I0X7 151 aa13.79□□□□□ -0.2
USP53-208ENST00000514305 KRTAP9-2Q9BYQ4 174 aa13.79□□□□□ -0.2
USP53-208ENST00000514305 KRTAP9-1A8MXZ3 250 aaPredicted RBP13.78□□□□□ -0.2
USP53-208ENST00000514305 FCER1GP30273 86 aa13.78□□□□□ -0.2
USP53-208ENST00000514305 IQCJQ1A5X6 159 aa13.78□□□□□ -0.2
USP53-208ENST00000514305 YPEL4Q96NS1 127 aa13.78□□□□□ -0.2
USP53-208ENST00000514305 UBE2L6O14933 153 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 AMTP48728 403 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 SMAGPQ0VAQ4 97 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 CHCHD5Q9BSY4 110 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 TMEM243Q9BU79 118 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 CHCHD7Q9BUK0 85 aa13.77□□□□□ -0.21
USP53-208ENST00000514305 A0A087WX48 190 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 TMEM262E9PQX1 116 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 GAS8-AS1O95177 125 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 NPYP01303 97 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 C10orf126Q8N4M7 172 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 SMIM2Q9BVW6 85 aa13.76□□□□□ -0.21
USP53-208ENST00000514305 PRSS47A8MTI9 375 aa13.75□□□□□ -0.21
USP53-208ENST00000514305 RAB5AP20339 215 aa13.75□□□□□ -0.21
USP53-208ENST00000514305 KIAA1644Q3SXP7 199 aa13.75□□□□□ -0.21
USP53-208ENST00000514305 TMEM18Q96B42 140 aa13.75□□□□□ -0.21
USP53-208ENST00000514305 H7C423 109 aa13.74□□□□□ -0.21
USP53-208ENST00000514305 DNAH10OSP0CZ25 163 aa13.74□□□□□ -0.21
USP53-208ENST00000514305 LINC01556Q5JQF7 62 aa13.74□□□□□ -0.21
USP53-208ENST00000514305 NXT2Q9NPJ8 142 aaKnown RBP13.74□□□□□ -0.21
USP53-208ENST00000514305 PKD1P98161 4303 aa13.74□□□□□ -0.21
USP53-208ENST00000514305 K7EMI3 77 aa13.73□□□□□ -0.21
USP53-208ENST00000514305 NTM-AS1Q6ZSK4 140 aa13.73□□□□□ -0.21
USP53-208ENST00000514305 WFDC10BQ8IUB3 73 aa13.73□□□□□ -0.21
USP53-208ENST00000514305 PCLOQ9Y6V0 5065 aa13.72□□□□□ -0.21
USP53-208ENST00000514305 NBDYA0A0U1RRE5 68 aa13.72□□□□□ -0.21
USP53-208ENST00000514305 BTF3P20290 206 aaKnown RBP13.72□□□□□ -0.21
USP53-208ENST00000514305 G0S2P27469 103 aa13.72□□□□□ -0.21
USP53-208ENST00000514305 ALKBH7Q9BT30 221 aaPredicted RBP13.72□□□□□ -0.21
USP53-208ENST00000514305 KRTAP9-6A0A140TA67 174 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 LOC389332A0A1B0GUA5 103 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 EREGO14944 169 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 NIT1Q86X76 327 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 Q8N8P6 123 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 PRSS3P2Q8NHM4 247 aa13.71□□□□□ -0.21
USP53-208ENST00000514305 COLCA2A8K830 154 aa13.7□□□□□ -0.22
USP53-208ENST00000514305 C6orf223Q8N319 242 aa13.7□□□□□ -0.22
USP53-208ENST00000514305 TSHBP01222 138 aa13.69□□□□□ -0.22
USP53-208ENST00000514305 AMMECR1LQ6DCA0 310 aa13.69□□□□□ -0.22
USP53-208ENST00000514305 SCO1O75880 301 aa13.68□□□□□ -0.22
USP53-208ENST00000514305 RAB5BP61020 215 aa13.68□□□□□ -0.22
USP53-208ENST00000514305 GAGE6Q13070 117 aa13.68□□□□□ -0.22
USP53-208ENST00000514305 ORMDL2Q53FV1 153 aa13.68□□□□□ -0.22
USP53-208ENST00000514305 IGHV3-30P01768 117 aa13.67□□□□□ -0.22
USP53-208ENST00000514305 IGHV3-33P01772 117 aa13.67□□□□□ -0.22
USP53-208ENST00000514305 IGHV3-30-3P0DP02 117 aa13.67□□□□□ -0.22
USP53-208ENST00000514305 IGHV3-30-5P0DP03 117 aa13.67□□□□□ -0.22
USP53-208ENST00000514305 TMEM101Q96IK0 257 aa13.67□□□□□ -0.22
USP53-208ENST00000514305 A0A1B0GUV1 79 aa13.66□□□□□ -0.22
USP53-208ENST00000514305 ESDP10768 282 aa13.66□□□□□ -0.22
USP53-208ENST00000514305 ZNF25P17030 456 aaPredicted RBP13.66□□□□□ -0.22
USP53-208ENST00000514305 DEFB104AQ8WTQ1 72 aa13.66□□□□□ -0.22
USP53-208ENST00000514305 LINC01549A6NIU2 74 aa13.65□□□□□ -0.22
USP53-208ENST00000514305 LAGE3Q14657 143 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms