RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 CHCHD1Q96BP2 118 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 KIR2DL4Q99706 377 aa9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 TMA7Q9Y2S6 64 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 IGHV3-38A0A0C4DH36 116 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 TCAPO15273 167 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 NUPR1O60356 82 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 TSHBP01222 138 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 LINC00310P59036 64 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 RNASEKQ6P5S7 137 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 AP5S1Q9NUS5 200 aa9.03□□□□□ -0.96
LIMCH1-220ENST00000514190 S100A6P06703 90 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 ESDP10768 282 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 COTL1Q14019 142 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 LAGE3Q14657 143 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 ZFAND6Q6FIF0 208 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 CEMP1Q6PRD7 247 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 DEFB104AQ8WTQ1 72 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 GTSF1LQ9H1H1 148 aa9.02□□□□□ -0.97
LIMCH1-220ENST00000514190 NUDT3O95989 172 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 FCER1GP30273 86 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 ORMDL2Q53FV1 153 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 TMEM97Q5BJF2 176 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 NTM-AS1Q6ZSK4 140 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 C15orf53Q8NAA6 179 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 ALMS1Q8TCU4 4167 aa9.01□□□□□ -0.97
LIMCH1-220ENST00000514190 IGLL5B9A064 214 aa9□□□□□ -0.97
LIMCH1-220ENST00000514190 HSBP1O75506 76 aa9□□□□□ -0.97
LIMCH1-220ENST00000514190 NUPR2A6NF83 97 aa8.99□□□□□ -0.97
LIMCH1-220ENST00000514190 C5orf52A6NGY3 159 aa8.99□□□□□ -0.97
LIMCH1-220ENST00000514190 TIRAPP58753 221 aa8.99□□□□□ -0.97
LIMCH1-220ENST00000514190 SNRPEP62304 92 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-220ENST00000514190 LYPD5Q6UWN5 251 aa8.99□□□□□ -0.97
LIMCH1-220ENST00000514190 TRBV6-8A0A0A6YYG3 113 aa8.98□□□□□ -0.97
LIMCH1-220ENST00000514190 G0S2P27469 103 aa8.98□□□□□ -0.97
LIMCH1-220ENST00000514190 AMTP48728 403 aa8.98□□□□□ -0.97
LIMCH1-220ENST00000514190 CHCHD7Q9BUK0 85 aa8.98□□□□□ -0.97
LIMCH1-220ENST00000514190 KLK5Q9Y337 293 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-220ENST00000514190 IGHV1-24A0A0C4DH33 117 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 PMCHL1Q16048 86 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 FAM19A2Q8N3H0 131 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 C20orf203Q8NBC4 194 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 APLNQ9ULZ1 77 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 HYDINQ4G0P3 5121 aa8.97□□□□□ -0.97
LIMCH1-220ENST00000514190 TRBV25-1A0A075B6N4 114 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 A0A096LNJ9 63 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 HBDP02042 147 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 ESRGQ1W209 222 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 LELP1Q5T871 98 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 HIST3H2BBQ8N257 126 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 TMEM243Q9BU79 118 aa8.96□□□□□ -0.98
LIMCH1-220ENST00000514190 BTF3P20290 206 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-220ENST00000514190 TCTAP57738 103 aa8.95□□□□□ -0.98
LIMCH1-220ENST00000514190 C2orf66Q6UXQ4 117 aa8.95□□□□□ -0.98
LIMCH1-220ENST00000514190 PACRGQ96M98 296 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-220ENST00000514190 CYSLTR1Q9Y271 337 aa8.95□□□□□ -0.98
LIMCH1-220ENST00000514190 LCE6AA0A183 80 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 LINC01549A6NIU2 74 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 H7C423 109 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 RPL39P62891 51 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 PDZD11Q5EBL8 140 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 TMEM18Q96B42 140 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 TOMM6Q96B49 74 aa8.94□□□□□ -0.98
LIMCH1-220ENST00000514190 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-220ENST00000514190 IGKV2-29A2NJV5 120 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-220ENST00000514190 S100A2P29034 98 aa8.93□□□□□ -0.98
LIMCH1-220ENST00000514190 CHCHD5Q9BSY4 110 aa8.93□□□□□ -0.98
LIMCH1-220ENST00000514190 TRAV8-6A0A0B4J262 113 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 IGIPA6NJ69 53 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 IFITM10A6NMD0 228 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 LEPROTL1O95214 131 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 GAGE6Q13070 117 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 SCGB3A1Q96QR1 104 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 HIST1H2BLQ99880 126 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 TIMM21Q9BVV7 248 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 PYGO1Q9Y3Y4 419 aa8.92□□□□□ -0.98
LIMCH1-220ENST00000514190 UBE2L6O14933 153 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 FGF6P10767 208 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 FABP4P15090 132 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 CCL18P55774 89 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 SMAGPQ0VAQ4 97 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 ERASQ7Z444 233 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 MRPL52Q86TS9 123 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 HSPB8Q9UJY1 196 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 LINC00588Q9Y4M8 146 aa8.91□□□□□ -0.98
LIMCH1-220ENST00000514190 TMEM262E9PQX1 116 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 ATP5LO75964 103 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 LINC00173Q6ZV60 143 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 TMEM141Q96I45 108 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 TIMM17AQ99595 171 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 SPANXA1Q9NS26 97 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 UBE2D4Q9Y2X8 147 aa8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 MRPS16Q9Y3D3 137 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 CSDC2Q9Y534 153 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-220ENST00000514190 A0A1B0GUV1 79 aa8.89□□□□□ -0.99
LIMCH1-220ENST00000514190 PKIAP61925 76 aa8.89□□□□□ -0.99
LIMCH1-220ENST00000514190 AMMECR1LQ6DCA0 310 aa8.89□□□□□ -0.99
LIMCH1-220ENST00000514190 DGAT2L7PQ6IED9 249 aa8.89□□□□□ -0.99
LIMCH1-220ENST00000514190 EPPK1P58107 5090 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-220ENST00000514190 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-220ENST00000514190 NPSP0C0P6 89 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms