RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 A0A0J9YWU9 116 aa11.25□□□□□ -0.61
SYNE1-227ENST00000489156 RPL36AP83881 106 aaKnown RBP11.25□□□□□ -0.61
SYNE1-227ENST00000489156 RPL36ALQ969Q0 106 aaKnown RBP11.25□□□□□ -0.61
SYNE1-227ENST00000489156 SCGB3A1Q96QR1 104 aa11.25□□□□□ -0.61
SYNE1-227ENST00000489156 DKK2Q9UBU2 259 aa11.25□□□□□ -0.61
SYNE1-227ENST00000489156 Q9UF83 564 aa11.25□□□□□ -0.61
SYNE1-227ENST00000489156 DEFB130BP0DP73 79 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 DEFB130AP0DP74 79 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 FHL2Q14192 279 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 FAM222AQ5U5X8 452 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 ZNF664Q8N3J9 261 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 VAMP8Q9BV40 100 aa11.24□□□□□ -0.61
SYNE1-227ENST00000489156 H0Y8G0 127 aa11.23□□□□□ -0.61
SYNE1-227ENST00000489156 PRSS1P07477 247 aa11.23□□□□□ -0.61
SYNE1-227ENST00000489156 PKIAP61925 76 aa11.23□□□□□ -0.61
SYNE1-227ENST00000489156 DAZ4Q86SG3 579 aaKnown RBP11.23□□□□□ -0.61
SYNE1-227ENST00000489156 ZNRF2Q8NHG8 242 aa11.23□□□□□ -0.61
SYNE1-227ENST00000489156 DAZ3Q9NR90 486 aaKnown RBP11.23□□□□□ -0.61
SYNE1-227ENST00000489156 TSTD3H0UI37 97 aa11.22□□□□□ -0.61
SYNE1-227ENST00000489156 C20orf203Q8NBC4 194 aa11.22□□□□□ -0.61
SYNE1-227ENST00000489156 PRADC1Q9BSG0 188 aa11.22□□□□□ -0.61
SYNE1-227ENST00000489156 C11orf68Q9H3H3 251 aaKnown RBP11.22□□□□□ -0.61
SYNE1-227ENST00000489156 TRAV9-2A0A087WT02 112 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 TEX48A0A1B0GUV7 120 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 IGIPA6NJ69 53 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 SPART-AS1P0CW21 52 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 Q6ZN92 141 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 TMEM141Q96I45 108 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 TIMM17AQ99595 171 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 CELA1Q9UNI1 258 aa11.21□□□□□ -0.61
SYNE1-227ENST00000489156 COTL1Q14019 142 aa11.21□□□□□ -0.62
SYNE1-227ENST00000489156 TRAV12-1A0A0B4J245 112 aa11.2□□□□□ -0.62
SYNE1-227ENST00000489156 UBE2D3P61077 147 aa11.2□□□□□ -0.62
SYNE1-227ENST00000489156 UBE2D2P62837 147 aa11.2□□□□□ -0.62
SYNE1-227ENST00000489156 HHLA3Q9XRX5 114 aa11.2□□□□□ -0.62
SYNE1-227ENST00000489156 PCP4L1A6NKN8 68 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 RPL39P62891 51 aaKnown RBP11.19□□□□□ -0.62
SYNE1-227ENST00000489156 ODF1Q14990 250 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 ATOH7Q8N100 152 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 DEFB104AQ8WTQ1 72 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 PAM16Q9Y3D7 125 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 DAD1P61803 113 aa11.19□□□□□ -0.62
SYNE1-227ENST00000489156 A0A087WX48 190 aa11.18□□□□□ -0.62
SYNE1-227ENST00000489156 NPSP0C0P6 89 aa11.18□□□□□ -0.62
SYNE1-227ENST00000489156 PRO0255Q9UI72 69 aa11.18□□□□□ -0.62
SYNE1-227ENST00000489156 PYGO1Q9Y3Y4 419 aa11.18□□□□□ -0.62
SYNE1-227ENST00000489156 GAGE12JA6NER3 117 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 HSBP1L1C9JCN9 74 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 GAGE1Q13065 139 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 GAGE4Q13068 117 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 GAGE5Q13069 117 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 GAGE13Q4V321 117 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 PHLDA1Q8WV24 401 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-227ENST00000489156 BAALCQ8WXS3 180 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 PMCHL2Q9BQD1 86 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 CHCHD7Q9BUK0 85 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 GTSF1LQ9H1H1 148 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 SPATA45Q537H7 98 aa11.17□□□□□ -0.62
SYNE1-227ENST00000489156 IGHV3-38A0A0C4DH36 116 aa11.16□□□□□ -0.62
SYNE1-227ENST00000489156 ATP5G1P05496 136 aa11.16□□□□□ -0.62
SYNE1-227ENST00000489156 CRYBA4P53673 196 aa11.16□□□□□ -0.62
SYNE1-227ENST00000489156 C11orf45Q8TAV5 145 aa11.16□□□□□ -0.62
SYNE1-227ENST00000489156 PRO1933Q9H354 126 aa11.16□□□□□ -0.62
SYNE1-227ENST00000489156 PAPPA-AS1Q5QFB9 102 aa11.15□□□□□ -0.62
SYNE1-227ENST00000489156 LINC00694P0DN24 101 aa11.15□□□□□ -0.63
SYNE1-227ENST00000489156 NANOS2P60321 138 aaKnown RBP11.15□□□□□ -0.63
SYNE1-227ENST00000489156 SPANXA1Q9NS26 97 aa11.15□□□□□ -0.63
SYNE1-227ENST00000489156 F8VRH5 84 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 DPM2O94777 84 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 IGKCP01834 107 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 PLNP26678 52 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 PMVKQ15126 192 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 C12orf74Q32Q52 190 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 MAJINQ3KP22 176 aa11.14□□□□□ -0.63
SYNE1-227ENST00000489156 LOC100131303A0A0U1RQF7 123 aa11.13□□□□□ -0.63
SYNE1-227ENST00000489156 TMEM97Q5BJF2 176 aa11.13□□□□□ -0.63
SYNE1-227ENST00000489156 MRPL35Q9NZE8 188 aaKnown RBP11.13□□□□□ -0.63
SYNE1-227ENST00000489156 hDV102S1A0JD36 115 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 PRSS29PA6NIE9 313 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 TIMM21Q9BVV7 248 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 CST9LQ9H4G1 147 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 CHTOPQ9Y3Y2 248 aaKnown RBP11.12□□□□□ -0.63
SYNE1-227ENST00000489156 PAX4O43316 350 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 SMAGPQ0VAQ4 97 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 NTM-AS1Q6ZSK4 140 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 Q6ZTC4 211 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 UBE2D4Q9Y2X8 147 aa11.12□□□□□ -0.63
SYNE1-227ENST00000489156 GYPEP15421 78 aa11.11□□□□□ -0.63
SYNE1-227ENST00000489156 DDTP30046 118 aa11.11□□□□□ -0.63
SYNE1-227ENST00000489156 IGLV4-3A0A075B6K6 122 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 H7C423 109 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 MIEN1Q9BRT3 115 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 CSDC2Q9Y534 153 aaKnown RBP11.1□□□□□ -0.63
SYNE1-227ENST00000489156 TRBV25-1A0A075B6N4 114 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 IGLC3P0DOY3 106 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 VCX2Q9H322 139 aa11.1□□□□□ -0.63
SYNE1-227ENST00000489156 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-227ENST00000489156 IGKV2-29A2NJV5 120 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-227ENST00000489156 MRPL52Q86TS9 123 aaKnown RBP11.09□□□□□ -0.63
SYNE1-227ENST00000489156 ATP6V0E2Q8NHE4 81 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms