RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 MLST8Q9BVC4 326 aa9.86□□□□□ -0.83
USP48-210ENST00000489108 PKIGQ9Y2B9 76 aa9.86□□□□□ -0.83
USP48-210ENST00000489108 FOXI1Q12951 378 aa9.85□□□□□ -0.83
USP48-210ENST00000489108 COTL1Q14019 142 aa9.85□□□□□ -0.83
USP48-210ENST00000489108 BAGE2Q86Y30 109 aa9.85□□□□□ -0.83
USP48-210ENST00000489108 CARD19Q96LW7 228 aa9.85□□□□□ -0.83
USP48-210ENST00000489108 NIT2Q9NQR4 276 aa9.85□□□□□ -0.83
USP48-210ENST00000489108 A0A1W2PNN7 141 aa9.84□□□□□ -0.83
USP48-210ENST00000489108 MAP1LC3B2A6NCE7 125 aa9.84□□□□□ -0.83
USP48-210ENST00000489108 PRR4Q16378 134 aa9.84□□□□□ -0.83
USP48-210ENST00000489108 S100ZQ8WXG8 99 aa9.84□□□□□ -0.83
USP48-210ENST00000489108 MAP1LC3BQ9GZQ8 125 aa9.84□□□□□ -0.83
USP48-210ENST00000489108 MT-ND6P03923 174 aa9.83□□□□□ -0.84
USP48-210ENST00000489108 PTTG1IPP53801 180 aa9.83□□□□□ -0.84
USP48-210ENST00000489108 GAGE2BQ13066 116 aa9.83□□□□□ -0.84
USP48-210ENST00000489108 AKR1C8PQ5T2L2 129 aa9.83□□□□□ -0.84
USP48-210ENST00000489108 TPPP3Q9BW30 176 aa9.83□□□□□ -0.84
USP48-210ENST00000489108 PAGE4O60829 102 aa9.82□□□□□ -0.84
USP48-210ENST00000489108 S100A9P06702 114 aaKnown RBP9.82□□□□□ -0.84
USP48-210ENST00000489108 Q5BKY6 102 aa9.82□□□□□ -0.84
USP48-210ENST00000489108 AMMECR1LQ6DCA0 310 aa9.82□□□□□ -0.84
USP48-210ENST00000489108 BORCS7-ASMTA0A0B4J1R7 106 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 IGHV1-58A0A0C4DH39 117 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 SCO2A0A1W2PP80 73 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 XCL1P47992 114 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 SYCNQ0VAF6 134 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 C1orf137Q5JT78 98 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 RNASEKQ6P5S7 137 aaKnown RBP9.81□□□□□ -0.84
USP48-210ENST00000489108 LINC00299Q6ZSB3 139 aa9.81□□□□□ -0.84
USP48-210ENST00000489108 IGLC6P0CF74 106 aa9.8□□□□□ -0.84
USP48-210ENST00000489108 FER1L6-AS1Q8NA97 138 aa9.8□□□□□ -0.84
USP48-210ENST00000489108 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.79□□□□□ -0.84
USP48-210ENST00000489108 IGKV2-29A2NJV5 120 aaPredicted RBP9.79□□□□□ -0.84
USP48-210ENST00000489108 MED28Q9H204 178 aa9.79□□□□□ -0.84
USP48-210ENST00000489108 NDUFA13Q9P0J0 144 aa9.79□□□□□ -0.84
USP48-210ENST00000489108 LOC107984640A0A0U1RRK4 108 aa9.78□□□□□ -0.84
USP48-210ENST00000489108 ZNF561-AS1K7EIQ3 104 aa9.78□□□□□ -0.84
USP48-210ENST00000489108 NTF3P20783 257 aa9.78□□□□□ -0.84
USP48-210ENST00000489108 Q6ZNX1 250 aa9.78□□□□□ -0.84
USP48-210ENST00000489108 DIRC1Q969H9 104 aa9.78□□□□□ -0.84
USP48-210ENST00000489108 LINC00959A0A1B0GUT2 108 aa9.77□□□□□ -0.85
USP48-210ENST00000489108 CCL25O15444 150 aa9.77□□□□□ -0.85
USP48-210ENST00000489108 FGF6P10767 208 aa9.77□□□□□ -0.85
USP48-210ENST00000489108 C9orf116Q5BN46 136 aaPredicted RBP9.77□□□□□ -0.85
USP48-210ENST00000489108 TMUB2Q71RG4 321 aa9.77□□□□□ -0.85
USP48-210ENST00000489108 PHF5AQ7RTV0 110 aaKnown RBP9.77□□□□□ -0.85
USP48-210ENST00000489108 OR5A1Q8NGJ0 315 aa9.77□□□□□ -0.85
USP48-210ENST00000489108 IGLV7-43P04211 117 aa9.76□□□□□ -0.85
USP48-210ENST00000489108 OR2D3Q8NGH3 330 aa9.76□□□□□ -0.85
USP48-210ENST00000489108 ALG5Q9Y673 324 aa9.76□□□□□ -0.85
USP48-210ENST00000489108 TRGC1P0CF51 173 aa9.75□□□□□ -0.85
USP48-210ENST00000489108 BCL2P10415 239 aa9.75□□□□□ -0.85
USP48-210ENST00000489108 CAMPP49913 170 aa9.75□□□□□ -0.85
USP48-210ENST00000489108 IGLV1-50A0A075B6I6 118 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 H0Y9J4 135 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 H7C423 109 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 DEFA1P59665 94 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 LYZL1Q6UWQ5 148 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 GATD1Q8NB37 220 aa9.74□□□□□ -0.85
USP48-210ENST00000489108 IGLV4-69A0A075B6H9 119 aa9.73□□□□□ -0.85
USP48-210ENST00000489108 A0A1B0GV50 99 aa9.73□□□□□ -0.85
USP48-210ENST00000489108 F2Z2F3 143 aa9.73□□□□□ -0.85
USP48-210ENST00000489108 NCR2O95944 276 aa9.73□□□□□ -0.85
USP48-210ENST00000489108 RPS20P60866 119 aaKnown RBP9.73□□□□□ -0.85
USP48-210ENST00000489108 FXYD6-FXYD2A0A087WZ82 144 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 PFDN1O60925 122 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 APCSP02743 223 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 RPL35P42766 123 aaKnown RBP9.72□□□□□ -0.85
USP48-210ENST00000489108 NUP35Q8NFH5 326 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 SFT2D1Q8WV19 159 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 ISOC2Q96AB3 205 aa9.72□□□□□ -0.85
USP48-210ENST00000489108 KRTAP1-4P0C5Y4 121 aa9.71□□□□□ -0.86
USP48-210ENST00000489108 ZNF25P17030 456 aaPredicted RBP9.71□□□□□ -0.86
USP48-210ENST00000489108 SS18Q15532 418 aa9.71□□□□□ -0.86
USP48-210ENST00000489108 CD164L2Q6UWJ8 174 aa9.71□□□□□ -0.86
USP48-210ENST00000489108 RPL39LQ96EH5 51 aaKnown RBP9.71□□□□□ -0.86
USP48-210ENST00000489108 BTF3L4Q96K17 158 aa9.71□□□□□ -0.86
USP48-210ENST00000489108 CYTL1Q9NRR1 136 aa9.71□□□□□ -0.86
USP48-210ENST00000489108 A0A087WZ39 114 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 C19orf71A6NCJ1 209 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.7□□□□□ -0.86
USP48-210ENST00000489108 APOMO95445 188 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 EIF5AP63241 154 aaKnown RBP9.7□□□□□ -0.86
USP48-210ENST00000489108 MEF2BQ02080 365 aaPredicted RBP9.7□□□□□ -0.86
USP48-210ENST00000489108 KRTAP11-1Q8IUC1 163 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 MBD3L1Q8WWY6 194 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 TMEM101Q96IK0 257 aa9.7□□□□□ -0.86
USP48-210ENST00000489108 RPL18AQ02543 176 aaKnown RBP9.69□□□□□ -0.86
USP48-210ENST00000489108 CAMK2N2Q96S95 79 aa9.69□□□□□ -0.86
USP48-210ENST00000489108 TRAV1-1A0A0B4J248 108 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 XKRY2A2RUG3 117 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 IFNA1P01562 189 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 UBE2D1P51668 147 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 TWIST1Q15672 202 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 KCNRGQ8N5I3 272 aa9.68□□□□□ -0.86
USP48-210ENST00000489108 OPRPNQ99935 248 aaPredicted RBP9.68□□□□□ -0.86
USP48-210ENST00000489108 SDHAF1A6NFY7 115 aa9.67□□□□□ -0.86
USP48-210ENST00000489108 GIPP09681 153 aaPredicted RBP9.67□□□□□ -0.86
USP48-210ENST00000489108 CENPWQ5EE01 88 aa9.67□□□□□ -0.86
USP48-210ENST00000489108 C9orf62Q8N4C0 152 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms